52 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100175816	TPR_REGION domain-containing protein. (1034 aa)
	LOC494392	Uncharacterized protein LOC494392. (131 aa)
	LOC100182642	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (354 aa)
	F6Y9U9_CIOIN	WD_REPEATS_REGION domain-containing protein. (320 aa)
	F6VNQ5_CIOIN	Uncharacterized protein. (187 aa)
	F7BHW5_CIOIN	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
	F6YZE6_CIOIN	Uncharacterized protein. (166 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XKX7_CIOIN	CID domain-containing protein. (235 aa)
	LOC100182087	WD repeat-containing protein 61-like. (305 aa)
	H2XQB7_CIOIN	PHD-type domain-containing protein. (164 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XTY0_CIOIN	Uncharacterized protein. (204 aa)
	H2XU12_CIOIN	Uncharacterized protein. (189 aa)
	H2XUU5_CIOIN	Uncharacterized protein. (532 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC100184165	General transcription factor IIH subunit 3-like. (309 aa)
	H2XWH5_CIOIN	Uncharacterized protein. (140 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2Y0S6_CIOIN	Uncharacterized protein. (1003 aa)
	H2Y332_CIOIN	DUF3591 domain-containing protein. (202 aa)
	LOC100181515	SH3 domain-binding protein 5-like isoform X1. (253 aa)
	LOC100175005	HTH TFE/IIEalpha-type domain-containing protein. (343 aa)
	Zf(c2h2)-114	General transcription factor IIH subunit. (395 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	LOC100179515	TFIIA-alpha and beta-like factor isoform X1. (332 aa)
	F6SJW4_CIOIN	Uncharacterized protein. (613 aa)
	F7A363_CIOIN	TBP-binding domain-containing protein. (480 aa)
	LOC100185111	BTP domain-containing protein. (231 aa)
	F6UE50_CIOIN	BTP domain-containing protein. (671 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	F6Z8X9_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (346 aa)
	F6YGZ1_CIOIN	Uncharacterized protein. (587 aa)
	F6RMT1_CIOIN	Uncharacterized protein. (551 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	LOC100177816	cyclin-H; Belongs to the cyclin family. (329 aa)
	F7AWN2_CIOIN	LisH domain-containing protein. (321 aa)
	F7AWC6_CIOIN	WD_REPEATS_REGION domain-containing protein. (272 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	F6PX81_CIOIN	Plus3 domain-containing protein. (336 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	F6S7U3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
	F6S7T3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	zf(ring)-55	Zinc finger protein. (323 aa)
	F7ATY3_CIOIN	Uncharacterized protein. (121 aa)
	F6X941_CIOIN	Uncharacterized protein. (296 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	F6U8F8_CIOIN	TAFH domain-containing protein. (598 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PX81_CIOIN	F6QR00_CIOIN	ENSCINP00000013055	ENSCINP00000013245	Plus3 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.743
F6PX81_CIOIN	F6X941_CIOIN	ENSCINP00000013055	ENSCINP00000022209	Plus3 domain-containing protein.	Uncharacterized protein.	0.754
F6PX81_CIOIN	F6XIG6_CIOIN	ENSCINP00000013055	ENSCINP00000021902	Plus3 domain-containing protein.	RPOL4c domain-containing protein.	0.779
F6PX81_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000013055	ENSCINP00000019931	Plus3 domain-containing protein.	RPOLD domain-containing protein.	0.544
F6PX81_CIOIN	F6YZE6_CIOIN	ENSCINP00000013055	ENSCINP00000027885	Plus3 domain-containing protein.	Uncharacterized protein.	0.972
F6PX81_CIOIN	H2XJG6_CIOIN	ENSCINP00000013055	ENSCINP00000029798	Plus3 domain-containing protein.	Uncharacterized protein.	0.691
F6PX81_CIOIN	H2XTY0_CIOIN	ENSCINP00000013055	ENSCINP00000033114	Plus3 domain-containing protein.	Uncharacterized protein.	0.707
F6PX81_CIOIN	H2XU12_CIOIN	ENSCINP00000013055	ENSCINP00000033146	Plus3 domain-containing protein.	Uncharacterized protein.	0.440
F6PX81_CIOIN	H2XUU5_CIOIN	ENSCINP00000013055	ENSCINP00000033429	Plus3 domain-containing protein.	Uncharacterized protein.	0.972
F6PX81_CIOIN	H2XVJ2_CIOIN	ENSCINP00000013055	ENSCINP00000033676	Plus3 domain-containing protein.	Uncharacterized protein.	0.689
F6PX81_CIOIN	H2XZ54_CIOIN	ENSCINP00000013055	ENSCINP00000034938	Plus3 domain-containing protein.	RPOLD domain-containing protein.	0.544
F6PX81_CIOIN	LOC100175816	ENSCINP00000013055	ENSCINP00000018251	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.979
F6PX81_CIOIN	LOC100177272	ENSCINP00000013055	ENSCINP00000016166	Plus3 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.790
F6PX81_CIOIN	LOC100177778	ENSCINP00000013055	ENSCINP00000010264	Plus3 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB7.	0.686
F6PX81_CIOIN	LOC100178283	ENSCINP00000013055	ENSCINP00000021822	Plus3 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.686
F6PX81_CIOIN	LOC100181341	ENSCINP00000013055	ENSCINP00000030207	Plus3 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB11-a isoform X1.	0.563
F6PX81_CIOIN	LOC100182087	ENSCINP00000013055	ENSCINP00000031610	Plus3 domain-containing protein.	WD repeat-containing protein 61-like.	0.939
F6PX81_CIOIN	LOC101242260	ENSCINP00000013055	ENSCINP00000032951	Plus3 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.724
F6PX81_CIOIN	LOC494392	ENSCINP00000013055	ENSCINP00000017068	Plus3 domain-containing protein.	Uncharacterized protein LOC494392.	0.997
F6QR00_CIOIN	F6PX81_CIOIN	ENSCINP00000013245	ENSCINP00000013055	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Plus3 domain-containing protein.	0.743