46 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCINP00000036096	Uncharacterized protein. (260 aa)
	H2XKE3_CIOIN	Uncharacterized protein. (220 aa)
	F6QTI2_CIOIN	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (226 aa)
	LOC100178413	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
	LOC100179273	Sas10 domain-containing protein. (465 aa)
	LOC100178383	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (397 aa)
	H2XM74_CIOIN	Uncharacterized protein. (234 aa)
	H2XQ81_CIOIN	PINc domain-containing protein. (201 aa)
	H2XRC6_CIOIN	Uncharacterized protein. (227 aa)
	LOC100180269	Uncharacterized protein. (866 aa)
	LOC100183259	Uncharacterized protein. (721 aa)
	F6YWB6_CIOIN	Nucleolar protein 6. (831 aa)
	LOC100182572	Bystin-like. (436 aa)
	LOC100179345	Uncharacterized protein LOC100179345. (235 aa)
	F6RA65_CIOIN	RIO domain-containing protein. (504 aa)
	F6QHS0_CIOIN	Uncharacterized protein. (394 aa)
	LOC100178939	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
	LOC100185465	U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
	F6QDE3_CIOIN	Bms1-type G domain-containing protein. (1061 aa)
	F6W1S6_CIOIN	Uncharacterized protein. (403 aa)
	F6ZN98_CIOIN	DRIM domain-containing protein. (2648 aa)
	LOC100177492	U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
	F6PLR6_CIOIN	Uncharacterized protein. (176 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	LOC100187346	Uncharacterized protein. (580 aa)
	F6ZL99_CIOIN	Utp12 domain-containing protein. (238 aa)
	F6YQR4_CIOIN	Uncharacterized protein. (754 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	F6YXI8_CIOIN	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (786 aa)
	LOC100183724	Alpha-tectorin-like. (434 aa)
	F6VKZ4_CIOIN	Ribosomal_L28e domain-containing protein. (209 aa)
	F6VJW8_CIOIN	RRP7 domain-containing protein. (43 aa)
	LOC100186662	Peptidyl-prolyl cis-trans isomerase. (128 aa)
	LOC100184403	Uncharacterized protein. (237 aa)
	F6R384_CIOIN	Uncharacterized protein. (240 aa)
	F6TAD8_CIOIN	CBF domain-containing protein. (511 aa)
	LOC100180912	rRNA-processing protein UTP23 homolog. (222 aa)
	F6RBK2_CIOIN	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (427 aa)
	F6T6V3_CIOIN	Nucleolar protein 6. (234 aa)
	LOC100184303	Uncharacterized protein. (463 aa)
	LOC100175357	Uromodulin. (445 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	H2XX34_CIOIN	Uncharacterized protein. (221 aa)
	LOC100184042	Uncharacterized protein. (611 aa)
	LOC100181824	Bms1-type G domain-containing protein. (784 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000036096	F6PLR6_CIOIN	ENSCINP00000036096	ENSCINP00000009882	Uncharacterized protein.	Uncharacterized protein.	0.441
ENSCINP00000036096	F6QTI2_CIOIN	ENSCINP00000036096	ENSCINP00000028871	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.998
ENSCINP00000036096	F6RA65_CIOIN	ENSCINP00000036096	ENSCINP00000004807	Uncharacterized protein.	RIO domain-containing protein.	0.431
ENSCINP00000036096	F6RBK2_CIOIN	ENSCINP00000036096	ENSCINP00000023978	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.988
ENSCINP00000036096	F6VKZ4_CIOIN	ENSCINP00000036096	ENSCINP00000014821	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.973
ENSCINP00000036096	F6W1S6_CIOIN	ENSCINP00000036096	ENSCINP00000006779	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSCINP00000036096	F6YQR4_CIOIN	ENSCINP00000036096	ENSCINP00000011177	Uncharacterized protein.	Uncharacterized protein.	0.982
ENSCINP00000036096	F6YXI8_CIOIN	ENSCINP00000036096	ENSCINP00000012564	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.964
ENSCINP00000036096	H2XKE3_CIOIN	ENSCINP00000036096	ENSCINP00000030125	Uncharacterized protein.	Uncharacterized protein.	0.862
ENSCINP00000036096	H2XQ81_CIOIN	ENSCINP00000036096	ENSCINP00000031815	Uncharacterized protein.	PINc domain-containing protein.	0.810
ENSCINP00000036096	H2XX34_CIOIN	ENSCINP00000036096	ENSCINP00000034218	Uncharacterized protein.	Uncharacterized protein.	0.829
ENSCINP00000036096	LOC100177492	ENSCINP00000036096	ENSCINP00000008737	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.901
ENSCINP00000036096	LOC100178383	ENSCINP00000036096	ENSCINP00000030728	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.523
ENSCINP00000036096	LOC100178413	ENSCINP00000036096	ENSCINP00000030415	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.489
ENSCINP00000036096	LOC100179273	ENSCINP00000036096	ENSCINP00000030416	Uncharacterized protein.	Sas10 domain-containing protein.	0.424
ENSCINP00000036096	LOC100180269	ENSCINP00000036096	ENSCINP00000032357	Uncharacterized protein.	Uncharacterized protein.	0.565
ENSCINP00000036096	LOC100180728	ENSCINP00000036096	ENSCINP00000010082	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.456
ENSCINP00000036096	LOC100180912	ENSCINP00000036096	ENSCINP00000023420	Uncharacterized protein.	rRNA-processing protein UTP23 homolog.	0.422
ENSCINP00000036096	LOC100181824	ENSCINP00000036096	ENSCINP00000036023	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.775
ENSCINP00000036096	LOC100182572	ENSCINP00000036096	ENSCINP00000003332	Uncharacterized protein.	Bystin-like.	0.762