(5 nodes) Ino80 complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183367	RuvB-like helicase; Belongs to the RuvB family. (456 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	nfrkb	Uncharacterized protein. (310 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100175935	LOC100177411	ENSCINP00000001676	ENSCINP00000009659	Ubiquitin carboxyl-terminal hydrolase.	RuvB-like helicase; Belongs to the RuvB family.	0.536
LOC100175935	LOC100183367	ENSCINP00000001676	ENSCINP00000009992	Ubiquitin carboxyl-terminal hydrolase.	RuvB-like helicase; Belongs to the RuvB family.	0.655
LOC100175935	nfrkb	ENSCINP00000001676	ENSCINP00000028983	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.857
LOC100177411	LOC100175935	ENSCINP00000009659	ENSCINP00000001676	RuvB-like helicase; Belongs to the RuvB family.	Ubiquitin carboxyl-terminal hydrolase.	0.536
LOC100177411	LOC100183367	ENSCINP00000009659	ENSCINP00000009992	RuvB-like helicase; Belongs to the RuvB family.	RuvB-like helicase; Belongs to the RuvB family.	0.999
LOC100177411	LOC100186474	ENSCINP00000009659	ENSCINP00000018054	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein LOC100186474 isoform X1.	0.780
LOC100177411	nfrkb	ENSCINP00000009659	ENSCINP00000028983	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.539
LOC100183367	LOC100175935	ENSCINP00000009992	ENSCINP00000001676	RuvB-like helicase; Belongs to the RuvB family.	Ubiquitin carboxyl-terminal hydrolase.	0.655
LOC100183367	LOC100177411	ENSCINP00000009992	ENSCINP00000009659	RuvB-like helicase; Belongs to the RuvB family.	RuvB-like helicase; Belongs to the RuvB family.	0.999
LOC100183367	LOC100186474	ENSCINP00000009992	ENSCINP00000018054	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein LOC100186474 isoform X1.	0.900
LOC100183367	nfrkb	ENSCINP00000009992	ENSCINP00000028983	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.915
LOC100186474	LOC100177411	ENSCINP00000018054	ENSCINP00000009659	Uncharacterized protein LOC100186474 isoform X1.	RuvB-like helicase; Belongs to the RuvB family.	0.780
LOC100186474	LOC100183367	ENSCINP00000018054	ENSCINP00000009992	Uncharacterized protein LOC100186474 isoform X1.	RuvB-like helicase; Belongs to the RuvB family.	0.900
LOC100186474	nfrkb	ENSCINP00000018054	ENSCINP00000028983	Uncharacterized protein LOC100186474 isoform X1.	Uncharacterized protein.	0.970
nfrkb	LOC100175935	ENSCINP00000028983	ENSCINP00000001676	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.857
nfrkb	LOC100177411	ENSCINP00000028983	ENSCINP00000009659	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.539
nfrkb	LOC100183367	ENSCINP00000028983	ENSCINP00000009992	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.915
nfrkb	LOC100186474	ENSCINP00000028983	ENSCINP00000018054	Uncharacterized protein.	Uncharacterized protein LOC100186474 isoform X1.	0.970