10 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100175357	Uromodulin. (445 aa)
	H2XQ81_CIOIN	PINc domain-containing protein. (201 aa)
	LOC100179273	Sas10 domain-containing protein. (465 aa)
	LOC100178413	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
	LOC100180912	rRNA-processing protein UTP23 homolog. (222 aa)
	LOC100184403	Uncharacterized protein. (237 aa)
	LOC100183724	Alpha-tectorin-like. (434 aa)
	LOC100183227	WD_REPEATS_REGION domain-containing protein. (708 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	F6ZN98_CIOIN	DRIM domain-containing protein. (2648 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6ZN98_CIOIN	H2XQ81_CIOIN	ENSCINP00000006949	ENSCINP00000031815	DRIM domain-containing protein.	PINc domain-containing protein.	0.995
F6ZN98_CIOIN	LOC100175357	ENSCINP00000006949	ENSCINP00000028714	DRIM domain-containing protein.	Uromodulin.	0.917
F6ZN98_CIOIN	LOC100178413	ENSCINP00000006949	ENSCINP00000030415	DRIM domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
F6ZN98_CIOIN	LOC100179273	ENSCINP00000006949	ENSCINP00000030416	DRIM domain-containing protein.	Sas10 domain-containing protein.	0.995
F6ZN98_CIOIN	LOC100180728	ENSCINP00000006949	ENSCINP00000010082	DRIM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
F6ZN98_CIOIN	LOC100180912	ENSCINP00000006949	ENSCINP00000023420	DRIM domain-containing protein.	rRNA-processing protein UTP23 homolog.	0.762
F6ZN98_CIOIN	LOC100183227	ENSCINP00000006949	ENSCINP00000011688	DRIM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.983
F6ZN98_CIOIN	LOC100183724	ENSCINP00000006949	ENSCINP00000012678	DRIM domain-containing protein.	Alpha-tectorin-like.	0.917
F6ZN98_CIOIN	LOC100184403	ENSCINP00000006949	ENSCINP00000020009	DRIM domain-containing protein.	Uncharacterized protein.	0.993
H2XQ81_CIOIN	F6ZN98_CIOIN	ENSCINP00000031815	ENSCINP00000006949	PINc domain-containing protein.	DRIM domain-containing protein.	0.995
H2XQ81_CIOIN	LOC100175357	ENSCINP00000031815	ENSCINP00000028714	PINc domain-containing protein.	Uromodulin.	0.919
H2XQ81_CIOIN	LOC100178413	ENSCINP00000031815	ENSCINP00000030415	PINc domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
H2XQ81_CIOIN	LOC100179273	ENSCINP00000031815	ENSCINP00000030416	PINc domain-containing protein.	Sas10 domain-containing protein.	0.997
H2XQ81_CIOIN	LOC100180728	ENSCINP00000031815	ENSCINP00000010082	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.988
H2XQ81_CIOIN	LOC100180912	ENSCINP00000031815	ENSCINP00000023420	PINc domain-containing protein.	rRNA-processing protein UTP23 homolog.	0.831
H2XQ81_CIOIN	LOC100183227	ENSCINP00000031815	ENSCINP00000011688	PINc domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.960
H2XQ81_CIOIN	LOC100183724	ENSCINP00000031815	ENSCINP00000012678	PINc domain-containing protein.	Alpha-tectorin-like.	0.919
H2XQ81_CIOIN	LOC100184403	ENSCINP00000031815	ENSCINP00000020009	PINc domain-containing protein.	Uncharacterized protein.	0.997
LOC100175357	F6ZN98_CIOIN	ENSCINP00000028714	ENSCINP00000006949	Uromodulin.	DRIM domain-containing protein.	0.917
LOC100175357	H2XQ81_CIOIN	ENSCINP00000028714	ENSCINP00000031815	Uromodulin.	PINc domain-containing protein.	0.919