(48 nodes) Sperm flagellum network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y0F0_CIOIN	Ion_trans domain-containing protein. (233 aa)
	Tkr	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (352 aa)
	LOC100186420	Dynein regulatory complex subunit 3-like. (519 aa)
	LOC100180066	Sodium/hydrogen exchanger 9B2-like. (535 aa)
	F6XIK1_CIOIN	Uncharacterized protein. (377 aa)
	F6QNG1_CIOIN	Uncharacterized protein. (244 aa)
	LOC100184622	TPR_REGION domain-containing protein. (419 aa)
	tektinA1	Uncharacterized protein. (447 aa)
	F6SG33_CIOIN	Uncharacterized protein; Belongs to the FGGY kinase family. (567 aa)
	ci-morn40	Radial spoke protein MORN40. (300 aa)
	F6Q427_CIOIN	Uncharacterized protein. (897 aa)
	LOC100179482	Stabilizer of axonemal microtubules 2. (452 aa)
	ciic3	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity). (653 aa)
	LOC100179487	Myosin-14-like. (531 aa)
	F6XBR0_CIOIN	Uncharacterized protein. (283 aa)
	LOC100177342	Uncharacterized protein. (257 aa)
	LOC100178371	Stabilizer of axonemal microtubules 2. (429 aa)
	F6YMF0_CIOIN	Uncharacterized protein. (348 aa)
	LOC100185844	Hydrolase_4 domain-containing protein. (396 aa)
	LOC100183423	Tctex1 domain-containing protein 2 isoform X1. (236 aa)
	F6WXB6_CIOIN	Na_H_Exchanger domain-containing protein. (462 aa)
	F6RAI3_CIOIN	Uncharacterized protein. (172 aa)
	F7ADW3_CIOIN	Uncharacterized protein. (990 aa)
	F7ADV8_CIOIN	Uncharacterized protein. (648 aa)
	F6V8Z4_CIOIN	Uncharacterized protein. (256 aa)
	F6UHX8_CIOIN	Uncharacterized protein. (177 aa)
	LOC100187286	Uncharacterized protein. (874 aa)
	LOC100184287	Uncharacterized protein. (902 aa)
	F6ZR21_CIOIN	Uncharacterized protein. (250 aa)
	F6TT48_CIOIN	Uncharacterized protein. (194 aa)
	F6TT24_CIOIN	Uncharacterized protein. (184 aa)
	F6T5L0_CIOIN	Uncharacterized protein. (343 aa)
	F6TE65_CIOIN	Na_H_Exchanger domain-containing protein. (254 aa)
	Pf16	Uncharacterized protein. (171 aa)
	F6UMX9_CIOIN	Uncharacterized protein. (425 aa)
	F6Y813_CIOIN	Na_H_Exchanger domain-containing protein. (539 aa)
	LOC100179428	RIIa domain-containing protein. (234 aa)
	H2XJT3_CIOIN	Uncharacterized protein. (317 aa)
	H2XKM9_CIOIN	Uncharacterized protein. (182 aa)
	H2XMJ3_CIOIN	Uncharacterized protein. (346 aa)
	LOC100177670	Uncharacterized protein. (152 aa)
	H2XQH8_CIOIN	Uncharacterized protein. (151 aa)
	H2XSS3_CIOIN	Uncharacterized protein. (95 aa)
	H2XW86_CIOIN	Uncharacterized protein. (262 aa)
	H2XXB3_CIOIN	Uncharacterized protein. (161 aa)
	H2Y1M0_CIOIN	SPATA6 domain-containing protein. (152 aa)
	H2Y2C9_CIOIN	Uncharacterized protein. (239 aa)
	H2Y2W9_CIOIN	Uncharacterized protein. (183 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q427_CIOIN	F6V8Z4_CIOIN	ENSCINP00000013016	ENSCINP00000022808	Uncharacterized protein.	Uncharacterized protein.	0.456
F6TT24_CIOIN	H2XJT3_CIOIN	ENSCINP00000024094	ENSCINP00000029915	Uncharacterized protein.	Uncharacterized protein.	0.433
F6UHX8_CIOIN	F6YMF0_CIOIN	ENSCINP00000022848	ENSCINP00000016585	Uncharacterized protein.	Uncharacterized protein.	0.945
F6UHX8_CIOIN	H2Y2C9_CIOIN	ENSCINP00000022848	ENSCINP00000036064	Uncharacterized protein.	Uncharacterized protein.	0.899
F6V8Z4_CIOIN	F6Q427_CIOIN	ENSCINP00000022808	ENSCINP00000013016	Uncharacterized protein.	Uncharacterized protein.	0.456
F6XIK1_CIOIN	LOC100186420	ENSCINP00000007618	ENSCINP00000003500	Uncharacterized protein.	Dynein regulatory complex subunit 3-like.	0.496
F6YMF0_CIOIN	F6UHX8_CIOIN	ENSCINP00000016585	ENSCINP00000022848	Uncharacterized protein.	Uncharacterized protein.	0.945
F6YMF0_CIOIN	H2Y2C9_CIOIN	ENSCINP00000016585	ENSCINP00000036064	Uncharacterized protein.	Uncharacterized protein.	0.919
F7ADV8_CIOIN	F7ADW3_CIOIN	ENSCINP00000021836	ENSCINP00000021835	Uncharacterized protein.	Uncharacterized protein.	0.938
F7ADW3_CIOIN	F7ADV8_CIOIN	ENSCINP00000021835	ENSCINP00000021836	Uncharacterized protein.	Uncharacterized protein.	0.938
H2XJT3_CIOIN	F6TT24_CIOIN	ENSCINP00000029915	ENSCINP00000024094	Uncharacterized protein.	Uncharacterized protein.	0.433
H2XJT3_CIOIN	H2Y0F0_CIOIN	ENSCINP00000029915	ENSCINP00000035384	Uncharacterized protein.	Ion_trans domain-containing protein.	0.683
H2XJT3_CIOIN	H2Y2W9_CIOIN	ENSCINP00000029915	ENSCINP00000036254	Uncharacterized protein.	Uncharacterized protein.	0.683
H2Y0F0_CIOIN	H2XJT3_CIOIN	ENSCINP00000035384	ENSCINP00000029915	Ion_trans domain-containing protein.	Uncharacterized protein.	0.683
H2Y0F0_CIOIN	H2Y2W9_CIOIN	ENSCINP00000035384	ENSCINP00000036254	Ion_trans domain-containing protein.	Uncharacterized protein.	0.540
H2Y2C9_CIOIN	F6UHX8_CIOIN	ENSCINP00000036064	ENSCINP00000022848	Uncharacterized protein.	Uncharacterized protein.	0.899
H2Y2C9_CIOIN	F6YMF0_CIOIN	ENSCINP00000036064	ENSCINP00000016585	Uncharacterized protein.	Uncharacterized protein.	0.919
H2Y2W9_CIOIN	H2XJT3_CIOIN	ENSCINP00000036254	ENSCINP00000029915	Uncharacterized protein.	Uncharacterized protein.	0.683
H2Y2W9_CIOIN	H2Y0F0_CIOIN	ENSCINP00000036254	ENSCINP00000035384	Uncharacterized protein.	Ion_trans domain-containing protein.	0.540
LOC100184622	LOC100187286	ENSCINP00000010136	ENSCINP00000023015	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.474