(9 nodes) Proton-transporting ATP synthase complex, coupling factor F(o) network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XX36_CIOIN	Uncharacterized protein. (231 aa)
	Q8HIN8_CIOIN	ATP synthase subunit a. (210 aa)
	LOC100179838	ATP synthase subunit O, mitochondrial. (213 aa)
	F6ZJ82_CIOIN	Uncharacterized protein. (588 aa)
	F6PM15_CIOIN	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...] (177 aa)
	LOC100178344	ATP synthase subunit f, mitochondrial. (116 aa)
	F6ZK97_CIOIN	Uncharacterized protein. (135 aa)
	LOC100180258	IQ domain-containing protein K-like isoform X1. (270 aa)
	LOC101243499	ATP synthase F(0) complex subunit C2, mitochondrial; Belongs to the ATPase C chain family. (123 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PM15_CIOIN	F6ZK97_CIOIN	ENSCINP00000025097	ENSCINP00000027548	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.999
F6PM15_CIOIN	H2XX36_CIOIN	ENSCINP00000025097	ENSCINP00000034220	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.994
F6PM15_CIOIN	LOC100178344	ENSCINP00000025097	ENSCINP00000027309	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit f, mitochondrial.	0.540
F6PM15_CIOIN	LOC100179838	ENSCINP00000025097	ENSCINP00000011862	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit O, mitochondrial.	0.999
F6PM15_CIOIN	LOC101243499	ENSCINP00000025097	ENSCINP00000030802	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase F(0) complex subunit C2, mitochondrial; Belongs to the ATPase C chain family.	0.999
F6PM15_CIOIN	Q8HIN8_CIOIN	ENSCINP00000025097	ENSCINP00000036589	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit a.	0.998
F6ZK97_CIOIN	F6PM15_CIOIN	ENSCINP00000027548	ENSCINP00000025097	Uncharacterized protein.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.999
F6ZK97_CIOIN	H2XX36_CIOIN	ENSCINP00000027548	ENSCINP00000034220	Uncharacterized protein.	Uncharacterized protein.	0.542
F6ZK97_CIOIN	LOC100178344	ENSCINP00000027548	ENSCINP00000027309	Uncharacterized protein.	ATP synthase subunit f, mitochondrial.	0.540
F6ZK97_CIOIN	LOC100179838	ENSCINP00000027548	ENSCINP00000011862	Uncharacterized protein.	ATP synthase subunit O, mitochondrial.	0.999
F6ZK97_CIOIN	LOC101243499	ENSCINP00000027548	ENSCINP00000030802	Uncharacterized protein.	ATP synthase F(0) complex subunit C2, mitochondrial; Belongs to the ATPase C chain family.	0.995
F6ZK97_CIOIN	Q8HIN8_CIOIN	ENSCINP00000027548	ENSCINP00000036589	Uncharacterized protein.	ATP synthase subunit a.	0.997
H2XX36_CIOIN	F6PM15_CIOIN	ENSCINP00000034220	ENSCINP00000025097	Uncharacterized protein.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.994
H2XX36_CIOIN	F6ZK97_CIOIN	ENSCINP00000034220	ENSCINP00000027548	Uncharacterized protein.	Uncharacterized protein.	0.542
H2XX36_CIOIN	LOC100178344	ENSCINP00000034220	ENSCINP00000027309	Uncharacterized protein.	ATP synthase subunit f, mitochondrial.	0.540
H2XX36_CIOIN	LOC100179838	ENSCINP00000034220	ENSCINP00000011862	Uncharacterized protein.	ATP synthase subunit O, mitochondrial.	0.994
H2XX36_CIOIN	LOC101243499	ENSCINP00000034220	ENSCINP00000030802	Uncharacterized protein.	ATP synthase F(0) complex subunit C2, mitochondrial; Belongs to the ATPase C chain family.	0.982
H2XX36_CIOIN	Q8HIN8_CIOIN	ENSCINP00000034220	ENSCINP00000036589	Uncharacterized protein.	ATP synthase subunit a.	0.969
LOC100178344	F6PM15_CIOIN	ENSCINP00000027309	ENSCINP00000025097	ATP synthase subunit f, mitochondrial.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.540
LOC100178344	F6ZK97_CIOIN	ENSCINP00000027309	ENSCINP00000027548	ATP synthase subunit f, mitochondrial.	Uncharacterized protein.	0.540