(51 nodes) SWI/SNF superfamily-type complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100184063	Chromatin complexes subunit BAP18 isoform X4. (211 aa)
	H2XJP4_CIOIN	Uncharacterized protein. (368 aa)
	H2XP71_CIOIN	Bromo domain-containing protein. (495 aa)
	LOC100184077	Transcriptional repressor p66-beta isoform X1. (683 aa)
	cbf-2	Transcription factor CBF/NF-Y/archaeal histone -2. (156 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2Y0B1_CIOIN	HIT-type domain-containing protein. (167 aa)
	H2Y0G6_CIOIN	Uncharacterized protein. (532 aa)
	LOC100182647	Barrier-to-autointegration factor. (90 aa)
	H2XVM9_CIOIN	Uncharacterized protein. (639 aa)
	F6U2A4_CIOIN	BAF250_C domain-containing protein. (629 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6QNL7_CIOIN	Uncharacterized protein. (1214 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	zf(phd)-1	Uncharacterized protein. (667 aa)
	F6UK15_CIOIN	SWIB domain-containing protein. (435 aa)
	Hmg2-like	HMG box domain-containing protein. (510 aa)
	F6RD19_CIOIN	Uncharacterized protein; Belongs to the actin family. (404 aa)
	F6Z4B6_CIOIN	Uncharacterized protein. (758 aa)
	LOC100183795	Inhibitor of growth protein. (401 aa)
	F6YSI2_CIOIN	Uncharacterized protein. (250 aa)
	F6Y9A9_CIOIN	Uncharacterized protein. (636 aa)
	F6U886_CIOIN	GLTSCR1 domain-containing protein. (211 aa)
	swi/snf	Ci-SWI/SNF protein. (1003 aa)
	zf(c2h2)-17	Zinc finger protein isoform X1. (399 aa)
	F6PM34_CIOIN	Bromo domain-containing protein. (594 aa)
	LOC100183367	RuvB-like helicase; Belongs to the RuvB family. (456 aa)
	F6WJV4_CIOIN	Uncharacterized protein. (879 aa)
	F6VYS8_CIOIN	Uncharacterized protein. (445 aa)
	LOC100185398	Actin-like protein 6B; Belongs to the actin family. (423 aa)
	mta	Ci-MTA protein. (661 aa)
	F6VEQ7_CIOIN	RFX-type winged-helix domain-containing protein. (624 aa)
	F6YUQ8_CIOIN	MPN domain-containing protein. (457 aa)
	F7B7U2_CIOIN	Bromo domain-containing protein. (440 aa)
	nfrkb	Uncharacterized protein. (310 aa)
	Zf(phd)-26	PHD-type domain-containing protein. (257 aa)
	F6XT34_CIOIN	HMG box domain-containing protein. (405 aa)
	F6ZJH0_CIOIN	Uncharacterized protein. (472 aa)
	Zf(c2h2)-80	Uncharacterized protein. (698 aa)
	LOC100183690	Uncharacterized protein. (363 aa)
	LOC100177517	Craniofacial development protein 1; May play a role during embryogenesis. (241 aa)
	F6UXY9_CIOIN	ARID domain-containing protein. (428 aa)
	F6ZDZ6_CIOIN	Uncharacterized protein. (462 aa)
	LOC778828	Uncharacterized protein. (818 aa)
	F6W213_CIOIN	Uncharacterized protein. (572 aa)
	F6WMT5_CIOIN	HSA domain-containing protein. (374 aa)
	F6PHE6_CIOIN	Uncharacterized protein. (387 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)
	F6R407_CIOIN	Uncharacterized protein. (1023 aa)
	LOC100180348	B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
	LOC104265886	Histone-binding protein RBBP4. (431 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHE6_CIOIN	F6PM34_CIOIN	ENSCINP00000018285	ENSCINP00000009862	Uncharacterized protein.	Bromo domain-containing protein.	0.877
F6PHE6_CIOIN	F6U2A4_CIOIN	ENSCINP00000018285	ENSCINP00000009518	Uncharacterized protein.	BAF250_C domain-containing protein.	0.982
F6PHE6_CIOIN	F6U886_CIOIN	ENSCINP00000018285	ENSCINP00000007469	Uncharacterized protein.	GLTSCR1 domain-containing protein.	0.695
F6PHE6_CIOIN	F6UK15_CIOIN	ENSCINP00000018285	ENSCINP00000003409	Uncharacterized protein.	SWIB domain-containing protein.	0.996
F6PHE6_CIOIN	F6UXY9_CIOIN	ENSCINP00000018285	ENSCINP00000021703	Uncharacterized protein.	ARID domain-containing protein.	0.860
F6PHE6_CIOIN	F6VEQ7_CIOIN	ENSCINP00000018285	ENSCINP00000013909	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.860
F6PHE6_CIOIN	F6W213_CIOIN	ENSCINP00000018285	ENSCINP00000018744	Uncharacterized protein.	Uncharacterized protein.	0.953
F6PHE6_CIOIN	F6WMT5_CIOIN	ENSCINP00000018285	ENSCINP00000018738	Uncharacterized protein.	HSA domain-containing protein.	0.953
F6PHE6_CIOIN	F6XT34_CIOIN	ENSCINP00000018285	ENSCINP00000015936	Uncharacterized protein.	HMG box domain-containing protein.	0.990
F6PHE6_CIOIN	F6Y9A9_CIOIN	ENSCINP00000018285	ENSCINP00000007355	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	F6YSI2_CIOIN	ENSCINP00000018285	ENSCINP00000007347	Uncharacterized protein.	Uncharacterized protein.	0.928
F6PHE6_CIOIN	H2XVM9_CIOIN	ENSCINP00000018285	ENSCINP00000033713	Uncharacterized protein.	Uncharacterized protein.	0.999
F6PHE6_CIOIN	LOC100180348	ENSCINP00000018285	ENSCINP00000017988	Uncharacterized protein.	B-cell CLL/lymphoma 7 protein family member B-like.	0.593
F6PHE6_CIOIN	LOC100182647	ENSCINP00000018285	ENSCINP00000033423	Uncharacterized protein.	Barrier-to-autointegration factor.	0.537
F6PHE6_CIOIN	LOC100183690	ENSCINP00000018285	ENSCINP00000026719	Uncharacterized protein.	Uncharacterized protein.	0.540
F6PHE6_CIOIN	LOC100185398	ENSCINP00000018285	ENSCINP00000010732	Uncharacterized protein.	Actin-like protein 6B; Belongs to the actin family.	0.996
F6PHE6_CIOIN	LOC104265886	ENSCINP00000018285	ENSCINP00000016261	Uncharacterized protein.	Histone-binding protein RBBP4.	0.504
F6PHE6_CIOIN	Zf(phd)-26	ENSCINP00000018285	ENSCINP00000029150	Uncharacterized protein.	PHD-type domain-containing protein.	0.621
F6PHE6_CIOIN	swi/snf	ENSCINP00000018285	ENSCINP00000008495	Uncharacterized protein.	Ci-SWI/SNF protein.	0.431
F6PHE6_CIOIN	zf(c2h2)-17	ENSCINP00000018285	ENSCINP00000033757	Uncharacterized protein.	Zinc finger protein isoform X1.	0.917