(11 nodes) INO80-type complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y0B1_CIOIN	HIT-type domain-containing protein. (167 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	F6RD19_CIOIN	Uncharacterized protein; Belongs to the actin family. (404 aa)
	LOC100183795	Inhibitor of growth protein. (401 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6QNL7_CIOIN	Uncharacterized protein. (1214 aa)
	LOC100183367	RuvB-like helicase; Belongs to the RuvB family. (456 aa)
	F7B7U2_CIOIN	Bromo domain-containing protein. (440 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)
	LOC100177517	Craniofacial development protein 1; May play a role during embryogenesis. (241 aa)
	nfrkb	Uncharacterized protein. (310 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QNL7_CIOIN	F6RD19_CIOIN	ENSCINP00000009715	ENSCINP00000006309	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.989
F6QNL7_CIOIN	F7B7U2_CIOIN	ENSCINP00000009715	ENSCINP00000015259	Uncharacterized protein.	Bromo domain-containing protein.	0.750
F6QNL7_CIOIN	H2Y0B1_CIOIN	ENSCINP00000009715	ENSCINP00000035345	Uncharacterized protein.	HIT-type domain-containing protein.	0.985
F6QNL7_CIOIN	LOC100177411	ENSCINP00000009715	ENSCINP00000009659	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.996
F6QNL7_CIOIN	LOC100177517	ENSCINP00000009715	ENSCINP00000025839	Uncharacterized protein.	Craniofacial development protein 1; May play a role during embryogenesis.	0.932
F6QNL7_CIOIN	LOC100183367	ENSCINP00000009715	ENSCINP00000009992	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.996
F6QNL7_CIOIN	LOC100183795	ENSCINP00000009715	ENSCINP00000007229	Uncharacterized protein.	Inhibitor of growth protein.	0.519
F6QNL7_CIOIN	LOC100186474	ENSCINP00000009715	ENSCINP00000018054	Uncharacterized protein.	Uncharacterized protein LOC100186474 isoform X1.	0.600
F6QNL7_CIOIN	nfrkb	ENSCINP00000009715	ENSCINP00000028983	Uncharacterized protein.	Uncharacterized protein.	0.574
F6RD19_CIOIN	F6QNL7_CIOIN	ENSCINP00000006309	ENSCINP00000009715	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.989
F6RD19_CIOIN	H2Y0B1_CIOIN	ENSCINP00000006309	ENSCINP00000035345	Uncharacterized protein; Belongs to the actin family.	HIT-type domain-containing protein.	0.992
F6RD19_CIOIN	LOC100177411	ENSCINP00000006309	ENSCINP00000009659	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; Belongs to the RuvB family.	0.978
F6RD19_CIOIN	LOC100177517	ENSCINP00000006309	ENSCINP00000025839	Uncharacterized protein; Belongs to the actin family.	Craniofacial development protein 1; May play a role during embryogenesis.	0.822
F6RD19_CIOIN	LOC100183367	ENSCINP00000006309	ENSCINP00000009992	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; Belongs to the RuvB family.	0.990
F6RD19_CIOIN	LOC100186474	ENSCINP00000006309	ENSCINP00000018054	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein LOC100186474 isoform X1.	0.563
F7B7U2_CIOIN	F6QNL7_CIOIN	ENSCINP00000015259	ENSCINP00000009715	Bromo domain-containing protein.	Uncharacterized protein.	0.750
F7B7U2_CIOIN	LOC100177411	ENSCINP00000015259	ENSCINP00000009659	Bromo domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.909
F7B7U2_CIOIN	LOC100183367	ENSCINP00000015259	ENSCINP00000009992	Bromo domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.906
F7B7U2_CIOIN	LOC100183795	ENSCINP00000015259	ENSCINP00000007229	Bromo domain-containing protein.	Inhibitor of growth protein.	0.915
H2Y0B1_CIOIN	F6QNL7_CIOIN	ENSCINP00000035345	ENSCINP00000009715	HIT-type domain-containing protein.	Uncharacterized protein.	0.985