(16 nodes) Ciliary base network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6TRI9_CIOIN	Uncharacterized protein. (190 aa)
	LOC100181294	Uncharacterized protein. (830 aa)
	F6PRB6_CIOIN	TPR_REGION domain-containing protein. (193 aa)
	LOC100183475	Cilia- and flagella-associated protein 36. (411 aa)
	F6R854_CIOIN	Uncharacterized protein. (555 aa)
	F6SXQ6_CIOIN	Uncharacterized protein. (1041 aa)
	F6U1V3_CIOIN	Uncharacterized protein. (1398 aa)
	F6TT48_CIOIN	Uncharacterized protein. (194 aa)
	LOC100185469	Uncharacterized protein. (139 aa)
	F7A819_CIOIN	DUF4549 domain-containing protein. (170 aa)
	F7AIU3_CIOIN	TPR_REGION domain-containing protein. (243 aa)
	H2XNP3_CIOIN	Uncharacterized protein. (344 aa)
	H2XQV2_CIOIN	Uncharacterized protein. (215 aa)
	H2XT22_CIOIN	Uncharacterized protein. (466 aa)
	H2XTF7_CIOIN	Uncharacterized protein. (835 aa)
	H2XVW8_CIOIN	Uncharacterized protein. (272 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PRB6_CIOIN	F6U1V3_CIOIN	ENSCINP00000009831	ENSCINP00000023812	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.538
F6R854_CIOIN	F7AIU3_CIOIN	ENSCINP00000018320	ENSCINP00000029332	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.557
F6R854_CIOIN	LOC100181294	ENSCINP00000018320	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.881
F6TT48_CIOIN	LOC100185469	ENSCINP00000024091	ENSCINP00000024583	Uncharacterized protein.	Uncharacterized protein.	0.509
F6U1V3_CIOIN	F6PRB6_CIOIN	ENSCINP00000023812	ENSCINP00000009831	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.538
F6U1V3_CIOIN	LOC100181294	ENSCINP00000023812	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.519
F7A819_CIOIN	H2XT22_CIOIN	ENSCINP00000025747	ENSCINP00000032806	DUF4549 domain-containing protein.	Uncharacterized protein.	0.918
F7A819_CIOIN	H2XTF7_CIOIN	ENSCINP00000025747	ENSCINP00000032941	DUF4549 domain-containing protein.	Uncharacterized protein.	0.902
F7AIU3_CIOIN	F6R854_CIOIN	ENSCINP00000029332	ENSCINP00000018320	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.557
F7AIU3_CIOIN	LOC100181294	ENSCINP00000029332	ENSCINP00000005526	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.880
H2XT22_CIOIN	F7A819_CIOIN	ENSCINP00000032806	ENSCINP00000025747	Uncharacterized protein.	DUF4549 domain-containing protein.	0.918
H2XT22_CIOIN	H2XTF7_CIOIN	ENSCINP00000032806	ENSCINP00000032941	Uncharacterized protein.	Uncharacterized protein.	0.899
H2XTF7_CIOIN	F7A819_CIOIN	ENSCINP00000032941	ENSCINP00000025747	Uncharacterized protein.	DUF4549 domain-containing protein.	0.902
H2XTF7_CIOIN	H2XT22_CIOIN	ENSCINP00000032941	ENSCINP00000032806	Uncharacterized protein.	Uncharacterized protein.	0.899
LOC100181294	F6R854_CIOIN	ENSCINP00000005526	ENSCINP00000018320	Uncharacterized protein.	Uncharacterized protein.	0.881
LOC100181294	F6U1V3_CIOIN	ENSCINP00000005526	ENSCINP00000023812	Uncharacterized protein.	Uncharacterized protein.	0.519
LOC100181294	F7AIU3_CIOIN	ENSCINP00000005526	ENSCINP00000029332	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.880
LOC100185469	F6TT48_CIOIN	ENSCINP00000024583	ENSCINP00000024091	Uncharacterized protein.	Uncharacterized protein.	0.509