(7 nodes) PB1 domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XJG5_CIOIN	Uncharacterized protein; Belongs to the protein kinase superfamily. (458 aa)
	F6W9U8_CIOIN	PB1 domain-containing protein. (224 aa)
	F6PPJ1_CIOIN	Protein kinase C. (582 aa)
	LOC100175009	Partitioning defective protein 6. (372 aa)
	LOC100181329	Protein TFG. (442 aa)
	LOC100184598	Sequestosome-1 isoform X1. (329 aa)
	LOC100175581	Uncharacterized protein LOC100175581. (186 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PPJ1_CIOIN	F6W9U8_CIOIN	ENSCINP00000006222	ENSCINP00000002565	Protein kinase C.	PB1 domain-containing protein.	0.726
F6PPJ1_CIOIN	LOC100175009	ENSCINP00000006222	ENSCINP00000008202	Protein kinase C.	Partitioning defective protein 6.	0.990
F6PPJ1_CIOIN	LOC100175581	ENSCINP00000006222	ENSCINP00000033899	Protein kinase C.	Uncharacterized protein LOC100175581.	0.726
F6PPJ1_CIOIN	LOC100184598	ENSCINP00000006222	ENSCINP00000023991	Protein kinase C.	Sequestosome-1 isoform X1.	0.726
F6W9U8_CIOIN	F6PPJ1_CIOIN	ENSCINP00000002565	ENSCINP00000006222	PB1 domain-containing protein.	Protein kinase C.	0.726
F6W9U8_CIOIN	LOC100184598	ENSCINP00000002565	ENSCINP00000023991	PB1 domain-containing protein.	Sequestosome-1 isoform X1.	0.909
LOC100175009	F6PPJ1_CIOIN	ENSCINP00000008202	ENSCINP00000006222	Partitioning defective protein 6.	Protein kinase C.	0.990
LOC100175581	F6PPJ1_CIOIN	ENSCINP00000033899	ENSCINP00000006222	Uncharacterized protein LOC100175581.	Protein kinase C.	0.726
LOC100184598	F6PPJ1_CIOIN	ENSCINP00000023991	ENSCINP00000006222	Sequestosome-1 isoform X1.	Protein kinase C.	0.726
LOC100184598	F6W9U8_CIOIN	ENSCINP00000023991	ENSCINP00000002565	Sequestosome-1 isoform X1.	PB1 domain-containing protein.	0.909