(6 nodes) Phosphoinositide 3-kinase, accessory (PIK) domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XJF2_CIOIN	Phosphatidylinositol 3-kinase catalytic subunit type 3. (931 aa)
	H2Y1I5_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1216 aa)
	F7B6Z2_CIOIN	Phosphatidylinositol 3-kinase catalytic subunit type 3. (1058 aa)
	LOC100180112	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1106 aa)
	F7BIS1_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (847 aa)
	F6QH36_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1667 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QH36_CIOIN	F7BIS1_CIOIN	ENSCINP00000004941	ENSCINP00000017962	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.654
F7B6Z2_CIOIN	H2XJF2_CIOIN	ENSCINP00000010684	ENSCINP00000006956	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.763
F7B6Z2_CIOIN	H2Y1I5_CIOIN	ENSCINP00000010684	ENSCINP00000035769	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.773
F7B6Z2_CIOIN	LOC100180112	ENSCINP00000010684	ENSCINP00000014240	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.816
F7BIS1_CIOIN	F6QH36_CIOIN	ENSCINP00000017962	ENSCINP00000004941	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.654
H2XJF2_CIOIN	F7B6Z2_CIOIN	ENSCINP00000006956	ENSCINP00000010684	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.763
H2XJF2_CIOIN	H2Y1I5_CIOIN	ENSCINP00000006956	ENSCINP00000035769	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.827
H2XJF2_CIOIN	LOC100180112	ENSCINP00000006956	ENSCINP00000014240	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.762
H2Y1I5_CIOIN	F7B6Z2_CIOIN	ENSCINP00000035769	ENSCINP00000010684	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.773
H2Y1I5_CIOIN	H2XJF2_CIOIN	ENSCINP00000035769	ENSCINP00000006956	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.827
H2Y1I5_CIOIN	LOC100180112	ENSCINP00000035769	ENSCINP00000014240	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.771
LOC100180112	F7B6Z2_CIOIN	ENSCINP00000014240	ENSCINP00000010684	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.816
LOC100180112	H2XJF2_CIOIN	ENSCINP00000014240	ENSCINP00000006956	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.762
LOC100180112	H2Y1I5_CIOIN	ENSCINP00000014240	ENSCINP00000035769	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.771