(7 nodes) Spectrin repeat network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y068_CIOIN	Uncharacterized protein. (219 aa)
	LOC100183424	Uncharacterized protein. (2024 aa)
	H2XNV5_CIOIN	Uncharacterized protein. (927 aa)
	F6S0E6_CIOIN	Uncharacterized protein. (1113 aa)
	F6Q5V5_CIOIN	Spectrin beta chain; Belongs to the spectrin family. (2494 aa)
	F7BIU1_CIOIN	Uncharacterized protein. (2113 aa)
	H2XVV8_CIOIN	DH domain-containing protein. (1503 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q5V5_CIOIN	H2Y068_CIOIN	ENSCINP00000018184	ENSCINP00000035302	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.935
F6Q5V5_CIOIN	LOC100183424	ENSCINP00000018184	ENSCINP00000032319	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.971
F7BIU1_CIOIN	H2XNV5_CIOIN	ENSCINP00000005989	ENSCINP00000031338	Uncharacterized protein.	Uncharacterized protein.	0.476
F7BIU1_CIOIN	LOC100183424	ENSCINP00000005989	ENSCINP00000032319	Uncharacterized protein.	Uncharacterized protein.	0.417
H2XNV5_CIOIN	F7BIU1_CIOIN	ENSCINP00000031338	ENSCINP00000005989	Uncharacterized protein.	Uncharacterized protein.	0.476
H2XNV5_CIOIN	H2Y068_CIOIN	ENSCINP00000031338	ENSCINP00000035302	Uncharacterized protein.	Uncharacterized protein.	0.543
H2Y068_CIOIN	F6Q5V5_CIOIN	ENSCINP00000035302	ENSCINP00000018184	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.935
H2Y068_CIOIN	H2XNV5_CIOIN	ENSCINP00000035302	ENSCINP00000031338	Uncharacterized protein.	Uncharacterized protein.	0.543
LOC100183424	F6Q5V5_CIOIN	ENSCINP00000032319	ENSCINP00000018184	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.971
LOC100183424	F7BIU1_CIOIN	ENSCINP00000032319	ENSCINP00000005989	Uncharacterized protein.	Uncharacterized protein.	0.417