(35 nodes) ABC transporter-like, ATP-binding domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100177585	ABC transporter domain-containing protein. (220 aa)
	LOC100184673	ATP-binding cassette sub-family E member 1. (600 aa)
	F6SUP0_CIOIN	ABC transporter domain-containing protein. (712 aa)
	LOC100181214	ATP-binding cassette sub-family D member 3-like. (658 aa)
	H2Y0M9_CIOIN	ABC transporter domain-containing protein. (173 aa)
	H2Y2G7_CIOIN	ABC transporter domain-containing protein. (176 aa)
	H2XS46_CIOIN	ABC transporter domain-containing protein. (227 aa)
	H2XQT6_CIOIN	Uncharacterized protein. (605 aa)
	H2XQ32_CIOIN	ABC transmembrane type-1 domain-containing protein. (641 aa)
	H2XNZ6_CIOIN	ABC transporter domain-containing protein. (673 aa)
	LOC100181360	Uncharacterized protein. (641 aa)
	H2XJT6_CIOIN	ABC transmembrane type-1 domain-containing protein. (229 aa)
	F6S2J4_CIOIN	Uncharacterized protein. (989 aa)
	F6S2T0_CIOIN	Uncharacterized protein. (1319 aa)
	F6Q5Y8_CIOIN	Uncharacterized protein. (1363 aa)
	F6UR44_CIOIN	ABC transporter domain-containing protein. (622 aa)
	LOC101243528	Uncharacterized protein. (648 aa)
	F6T8N6_CIOIN	Uncharacterized protein. (1291 aa)
	F6X753_CIOIN	ABC transporter domain-containing protein. (660 aa)
	LOC100180385	Uncharacterized protein. (1205 aa)
	F6YRI1_CIOIN	Uncharacterized protein. (742 aa)
	F6WVU8_CIOIN	Uncharacterized protein. (1286 aa)
	F6U062_CIOIN	Uncharacterized protein. (1360 aa)
	F6PGX9_CIOIN	Uncharacterized protein. (1230 aa)
	F6V2Z5_CIOIN	Uncharacterized protein. (1293 aa)
	F6USW1_CIOIN	Uncharacterized protein. (1655 aa)
	F7AVY6_CIOIN	Uncharacterized protein. (705 aa)
	F6WPA1_CIOIN	ABC transporter domain-containing protein. (663 aa)
	LOC100184731	Uncharacterized protein. (1196 aa)
	LOC100184484	Uncharacterized protein. (1055 aa)
	H2XYB3_CIOIN	Uncharacterized protein. (810 aa)
	L7N0R8_CIOIN	ABC transporter domain-containing protein. (605 aa)
	LOC100185135	ATP-binding cassette sub-family F member 2. (664 aa)
	F6ZIB9_CIOIN	ABC transporter domain-containing protein. (291 aa)
	F7B860_CIOIN	ABC transporter domain-containing protein. (306 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U062_CIOIN	LOC100181360	ENSCINP00000013647	ENSCINP00000030866	Uncharacterized protein.	Uncharacterized protein.	0.482
F6YRI1_CIOIN	LOC100181214	ENSCINP00000014767	ENSCINP00000000355	Uncharacterized protein.	ATP-binding cassette sub-family D member 3-like.	0.989
F6YRI1_CIOIN	LOC100181360	ENSCINP00000014767	ENSCINP00000030866	Uncharacterized protein.	Uncharacterized protein.	0.964
F6ZIB9_CIOIN	H2XJT6_CIOIN	ENSCINP00000003893	ENSCINP00000029918	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.924
F6ZIB9_CIOIN	H2XQ32_CIOIN	ENSCINP00000003893	ENSCINP00000031766	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.816
F7AVY6_CIOIN	H2XQT6_CIOIN	ENSCINP00000011067	ENSCINP00000032020	Uncharacterized protein.	Uncharacterized protein.	0.623
F7AVY6_CIOIN	LOC100184673	ENSCINP00000011067	ENSCINP00000003095	Uncharacterized protein.	ATP-binding cassette sub-family E member 1.	0.771
F7B860_CIOIN	H2XJT6_CIOIN	ENSCINP00000003275	ENSCINP00000029918	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.826
F7B860_CIOIN	H2XQT6_CIOIN	ENSCINP00000003275	ENSCINP00000032020	ABC transporter domain-containing protein.	Uncharacterized protein.	0.651
H2XJT6_CIOIN	F6ZIB9_CIOIN	ENSCINP00000029918	ENSCINP00000003893	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.924
H2XJT6_CIOIN	F7B860_CIOIN	ENSCINP00000029918	ENSCINP00000003275	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.826
H2XJT6_CIOIN	H2XQT6_CIOIN	ENSCINP00000029918	ENSCINP00000032020	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.920
H2XJT6_CIOIN	H2Y0M9_CIOIN	ENSCINP00000029918	ENSCINP00000035463	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.925
H2XQ32_CIOIN	F6ZIB9_CIOIN	ENSCINP00000031766	ENSCINP00000003893	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.816
H2XQ32_CIOIN	H2XQT6_CIOIN	ENSCINP00000031766	ENSCINP00000032020	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.521
H2XQ32_CIOIN	H2Y2G7_CIOIN	ENSCINP00000031766	ENSCINP00000036102	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.925
H2XQT6_CIOIN	F7AVY6_CIOIN	ENSCINP00000032020	ENSCINP00000011067	Uncharacterized protein.	Uncharacterized protein.	0.623
H2XQT6_CIOIN	F7B860_CIOIN	ENSCINP00000032020	ENSCINP00000003275	Uncharacterized protein.	ABC transporter domain-containing protein.	0.651
H2XQT6_CIOIN	H2XJT6_CIOIN	ENSCINP00000032020	ENSCINP00000029918	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.920
H2XQT6_CIOIN	H2XQ32_CIOIN	ENSCINP00000032020	ENSCINP00000031766	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.521