(9 nodes) Dynein heavy chain, linker network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZKS0_CIOIN	Uncharacterized protein. (3431 aa)
	LOC100184836	Uncharacterized protein. (4603 aa)
	F7AU91_CIOIN	Uncharacterized protein. (4471 aa)
	LOC100180857	Uncharacterized protein. (3522 aa)
	F6ZZ40_CIOIN	Uncharacterized protein. (4467 aa)
	F6PHB9_CIOIN	Uncharacterized protein. (4239 aa)
	H2XPC8_CIOIN	Uncharacterized protein. (4583 aa)
	H2XWA3_CIOIN	DHC_N2 domain-containing protein. (79 aa)
	H2XZK1_CIOIN	DHC_N2 domain-containing protein. (216 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHB9_CIOIN	H2XPC8_CIOIN	ENSCINP00000018292	ENSCINP00000031511	Uncharacterized protein.	Uncharacterized protein.	0.548
F6PHB9_CIOIN	LOC100184836	ENSCINP00000018292	ENSCINP00000008812	Uncharacterized protein.	Uncharacterized protein.	0.548
F6ZKS0_CIOIN	H2XZK1_CIOIN	ENSCINP00000003581	ENSCINP00000035085	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.540
H2XPC8_CIOIN	F6PHB9_CIOIN	ENSCINP00000031511	ENSCINP00000018292	Uncharacterized protein.	Uncharacterized protein.	0.548
H2XPC8_CIOIN	LOC100184836	ENSCINP00000031511	ENSCINP00000008812	Uncharacterized protein.	Uncharacterized protein.	0.548
H2XZK1_CIOIN	F6ZKS0_CIOIN	ENSCINP00000035085	ENSCINP00000003581	DHC_N2 domain-containing protein.	Uncharacterized protein.	0.540
LOC100184836	F6PHB9_CIOIN	ENSCINP00000008812	ENSCINP00000018292	Uncharacterized protein.	Uncharacterized protein.	0.548
LOC100184836	H2XPC8_CIOIN	ENSCINP00000008812	ENSCINP00000031511	Uncharacterized protein.	Uncharacterized protein.	0.548