(19 nodes) Ribosomal protein S5 domain 2-type fold, subgroup network (Ciona intestinalis)

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proteins of unknown 3D structure

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Your Input:
	H2XWE4_CIOIN	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	H2XTF1_CIOIN	Mevalonate kinase. (331 aa)
	F6ZS66_CIOIN	Uncharacterized protein. (453 aa)
	LOC100184797	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (768 aa)
	LOC100175824	116 kDa U5 small nuclear ribonucleoprotein component. (973 aa)
	LOC100186308	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	LOC100177329	Galactokinase-like. (396 aa)
	F6ZUK0_CIOIN	DNA_mis_repair domain-containing protein. (330 aa)
	LOC100182748	DNA_mis_repair domain-containing protein. (751 aa)
	F6XKY1_CIOIN	Tr-type G domain-containing protein. (836 aa)
	F6XKZ0_CIOIN	EFG_C domain-containing protein. (162 aa)
	F6Z5E6_CIOIN	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (844 aa)
	F7A713_CIOIN	Tr-type G domain-containing protein. (736 aa)
	Ci-htf-1	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1297 aa)
	F6WQI3_CIOIN	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (385 aa)
	F6Z0U1_CIOIN	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (380 aa)
	LOC100180400	Uncharacterized protein. (817 aa)
	H2XU63_CIOIN	Lon proteolytic domain-containing protein. (80 aa)
	H2XWD5_CIOIN	Lon proteolytic domain-containing protein. (82 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-htf-1	F6WQI3_CIOIN	ENSCINP00000017040	ENSCINP00000011772	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.477
Ci-htf-1	F7A713_CIOIN	ENSCINP00000017040	ENSCINP00000006920	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	Tr-type G domain-containing protein.	0.580
Ci-htf-1	H2XWE4_CIOIN	ENSCINP00000017040	ENSCINP00000033978	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.478
Ci-htf-1	LOC100182748	ENSCINP00000017040	ENSCINP00000005229	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	DNA_mis_repair domain-containing protein.	0.499
F6WQI3_CIOIN	Ci-htf-1	ENSCINP00000011772	ENSCINP00000017040	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.477
F6WQI3_CIOIN	F6XKY1_CIOIN	ENSCINP00000011772	ENSCINP00000019008	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.756
F6WQI3_CIOIN	F6XKZ0_CIOIN	ENSCINP00000011772	ENSCINP00000019007	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	EFG_C domain-containing protein.	0.756
F6WQI3_CIOIN	F7A713_CIOIN	ENSCINP00000011772	ENSCINP00000006920	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.422
F6WQI3_CIOIN	LOC100175824	ENSCINP00000011772	ENSCINP00000019043	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	116 kDa U5 small nuclear ribonucleoprotein component.	0.756
F6WQI3_CIOIN	LOC100184797	ENSCINP00000011772	ENSCINP00000022593	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.768
F6WQI3_CIOIN	LOC100186308	ENSCINP00000011772	ENSCINP00000034355	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.868
F6XKY1_CIOIN	F6WQI3_CIOIN	ENSCINP00000019008	ENSCINP00000011772	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.756
F6XKY1_CIOIN	H2XWE4_CIOIN	ENSCINP00000019008	ENSCINP00000033978	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.931
F6XKY1_CIOIN	LOC100186308	ENSCINP00000019008	ENSCINP00000034355	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.894
F6XKZ0_CIOIN	F6WQI3_CIOIN	ENSCINP00000019007	ENSCINP00000011772	EFG_C domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.756
F6XKZ0_CIOIN	H2XWE4_CIOIN	ENSCINP00000019007	ENSCINP00000033978	EFG_C domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.931
F6XKZ0_CIOIN	LOC100175824	ENSCINP00000019007	ENSCINP00000019043	EFG_C domain-containing protein.	116 kDa U5 small nuclear ribonucleoprotein component.	0.554
F6XKZ0_CIOIN	LOC100186308	ENSCINP00000019007	ENSCINP00000034355	EFG_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.894
F6Z0U1_CIOIN	H2XTF1_CIOIN	ENSCINP00000010736	ENSCINP00000032935	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	Mevalonate kinase.	0.995
F6ZS66_CIOIN	H2XTF1_CIOIN	ENSCINP00000028204	ENSCINP00000032935	Uncharacterized protein.	Mevalonate kinase.	0.473