(12 nodes) DnaJ domain, conserved site network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZUM5_CIOIN	Uncharacterized protein. (508 aa)
	zf(u1like)-8	Uncharacterized protein. (516 aa)
	LOC100184763	dnaJ homolog subfamily C member 25. (343 aa)
	LOC100187478	dnaJ homolog subfamily B member 11-like. (360 aa)
	H2XRR7_CIOIN	J domain-containing protein. (229 aa)
	F6QU62_CIOIN	J domain-containing protein. (430 aa)
	LOC100180605	Uncharacterized protein. (481 aa)
	LOC100179175	Uncharacterized protein. (817 aa)
	F6WUA7_CIOIN	J domain-containing protein. (237 aa)
	LOC100186653	dnaJ homolog subfamily A member 1-like. (403 aa)
	F6SZQ5_CIOIN	J domain-containing protein. (558 aa)
	F6YBW0_CIOIN	J domain-containing protein. (342 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QU62_CIOIN	LOC100186653	ENSCINP00000028850	ENSCINP00000018243	J domain-containing protein.	dnaJ homolog subfamily A member 1-like.	0.539
F6WUA7_CIOIN	LOC100186653	ENSCINP00000021959	ENSCINP00000018243	J domain-containing protein.	dnaJ homolog subfamily A member 1-like.	0.558
F6YBW0_CIOIN	LOC100180605	ENSCINP00000012873	ENSCINP00000026032	J domain-containing protein.	Uncharacterized protein.	0.536
F6YBW0_CIOIN	LOC100186653	ENSCINP00000012873	ENSCINP00000018243	J domain-containing protein.	dnaJ homolog subfamily A member 1-like.	0.763
F6ZUM5_CIOIN	LOC100180605	ENSCINP00000007593	ENSCINP00000026032	Uncharacterized protein.	Uncharacterized protein.	0.489
F6ZUM5_CIOIN	zf(u1like)-8	ENSCINP00000007593	ENSCINP00000005391	Uncharacterized protein.	Uncharacterized protein.	0.568
H2XRR7_CIOIN	LOC100180605	ENSCINP00000032351	ENSCINP00000026032	J domain-containing protein.	Uncharacterized protein.	0.528
H2XRR7_CIOIN	LOC100186653	ENSCINP00000032351	ENSCINP00000018243	J domain-containing protein.	dnaJ homolog subfamily A member 1-like.	0.773
LOC100179175	LOC100187478	ENSCINP00000024096	ENSCINP00000032640	Uncharacterized protein.	dnaJ homolog subfamily B member 11-like.	0.915
LOC100180605	F6YBW0_CIOIN	ENSCINP00000026032	ENSCINP00000012873	Uncharacterized protein.	J domain-containing protein.	0.536
LOC100180605	F6ZUM5_CIOIN	ENSCINP00000026032	ENSCINP00000007593	Uncharacterized protein.	Uncharacterized protein.	0.489
LOC100180605	H2XRR7_CIOIN	ENSCINP00000026032	ENSCINP00000032351	Uncharacterized protein.	J domain-containing protein.	0.528
LOC100180605	LOC100186653	ENSCINP00000026032	ENSCINP00000018243	Uncharacterized protein.	dnaJ homolog subfamily A member 1-like.	0.541
LOC100186653	F6QU62_CIOIN	ENSCINP00000018243	ENSCINP00000028850	dnaJ homolog subfamily A member 1-like.	J domain-containing protein.	0.539
LOC100186653	F6WUA7_CIOIN	ENSCINP00000018243	ENSCINP00000021959	dnaJ homolog subfamily A member 1-like.	J domain-containing protein.	0.558
LOC100186653	F6YBW0_CIOIN	ENSCINP00000018243	ENSCINP00000012873	dnaJ homolog subfamily A member 1-like.	J domain-containing protein.	0.763
LOC100186653	H2XRR7_CIOIN	ENSCINP00000018243	ENSCINP00000032351	dnaJ homolog subfamily A member 1-like.	J domain-containing protein.	0.773
LOC100186653	LOC100180605	ENSCINP00000018243	ENSCINP00000026032	dnaJ homolog subfamily A member 1-like.	Uncharacterized protein.	0.541
LOC100187478	LOC100179175	ENSCINP00000032640	ENSCINP00000024096	dnaJ homolog subfamily B member 11-like.	Uncharacterized protein.	0.915
zf(u1like)-8	F6ZUM5_CIOIN	ENSCINP00000005391	ENSCINP00000007593	Uncharacterized protein.	Uncharacterized protein.	0.568