94 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y1I4_CIOIN	WD_REPEATS_REGION domain-containing protein. (356 aa)
	H2Y1F1_CIOIN	WD_REPEATS_REGION domain-containing protein. (255 aa)
	H2Y0Z1_CIOIN	WD_REPEATS_REGION domain-containing protein. (995 aa)
	H2Y0Y4_CIOIN	Coronin; Belongs to the WD repeat coronin family. (210 aa)
	H2Y0G9_CIOIN	WD_REPEATS_REGION domain-containing protein. (692 aa)
	LOC100185742	Guanine nucleotide-binding protein subunit beta-5. (376 aa)
	H2XZN8_CIOIN	WD_REPEATS_REGION domain-containing protein. (186 aa)
	H2XQ91_CIOIN	WD_REPEATS_REGION domain-containing protein. (456 aa)
	LOC100182087	WD repeat-containing protein 61-like. (305 aa)
	H2XNQ0_CIOIN	Uncharacterized protein. (847 aa)
	LOC100180225	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. (411 aa)
	LOC100182411	WD_REPEATS_REGION domain-containing protein. (294 aa)
	zf(fyve)-1	Zinc finger protein. (402 aa)
	LOC100183888	Prolactin regulatory element-binding protein-like. (429 aa)
	KATNB1	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. (666 aa)
	F6Y6X2_CIOIN	WD_REPEATS_REGION domain-containing protein. (130 aa)
	F6Y9U9_CIOIN	WD_REPEATS_REGION domain-containing protein. (320 aa)
	LOC100177422	WD_REPEATS_REGION domain-containing protein. (378 aa)
	F6RFI3_CIOIN	WD_REPEATS_REGION domain-containing protein. (346 aa)
	F6YFF3_CIOIN	Uncharacterized protein. (1011 aa)
	F6VUV2_CIOIN	Uncharacterized protein. (313 aa)
	F6RBK2_CIOIN	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (427 aa)
	LOC100175499	WD_REPEATS_REGION domain-containing protein. (610 aa)
	F6YJE0_CIOIN	Uncharacterized protein. (772 aa)
	LOC100185530	WD_REPEATS_REGION domain-containing protein. (384 aa)
	F6Y5P5_CIOIN	WD_REPEATS_REGION domain-containing protein. (259 aa)
	F6W8G0_CIOIN	WD_REPEATS_REGION domain-containing protein. (504 aa)
	F7AXC6_CIOIN	WD_REPEATS_REGION domain-containing protein. (221 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	F6WY47_CIOIN	WD_REPEATS_REGION domain-containing protein. (519 aa)
	F6ZM65_CIOIN	WD_REPEATS_REGION domain-containing protein. (483 aa)
	F7A5V7_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	betaTrCP	Beta-transducin repeat-containing HOMOLOGUE protein. (621 aa)
	ckn1	Cockayne syndrome 1 homolog. (403 aa)
	LOC100185196	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1225 aa)
	F6R815_CIOIN	LLGL domain-containing protein. (870 aa)
	ci-zf(ring)-3	Uncharacterized protein. (996 aa)
	F6QXC2_CIOIN	Uncharacterized protein. (538 aa)
	groucho2	Uncharacterized protein. (835 aa)
	groucho1	Groucho. (847 aa)
	LOC100178079	Sperm-associated antigen 16 protein. (606 aa)
	F6QH89_CIOIN	Uncharacterized protein. (420 aa)
	LOC100181007	Uncharacterized protein. (945 aa)
	LOC104265886	Histone-binding protein RBBP4. (431 aa)
	LOC100181614	Dynein assembly factor with WDR repeat domains 1-like. (415 aa)
	F6WHS8_CIOIN	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1037 aa)
	LOC100186524	DDB1- and CUL4-associated factor 7. (343 aa)
	LOC100176561	WD_REPEATS_REGION domain-containing protein. (491 aa)
	F6TVK8_CIOIN	WD_REPEATS_REGION domain-containing protein. (559 aa)
	F6S7I2_CIOIN	Uncharacterized protein. (1461 aa)
	F6THM1_CIOIN	WD_REPEATS_REGION domain-containing protein. (606 aa)
	F7AE45_CIOIN	Uncharacterized protein. (498 aa)
	LOC100176938	WD repeat-containing protein 5. (360 aa)
	LOC100180904	Polycomb protein eed. (424 aa)
	LOC100176761	WD_REPEATS_REGION domain-containing protein. (383 aa)
	LOC100183839	U5 small nuclear ribonucleoprotein 40 kDa protein. (351 aa)
	F6RKQ2_CIOIN	Uncharacterized protein. (437 aa)
	LOC100184010	mRNA export factor. (361 aa)
	F6ZEC7_CIOIN	WD_REPEATS_REGION domain-containing protein. (299 aa)
	F7B1X4_CIOIN	WD_REPEATS_REGION domain-containing protein. (523 aa)
	F7BL69_CIOIN	WD_REPEATS_REGION domain-containing protein. (598 aa)
	F6YXI8_CIOIN	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (786 aa)
	F6ZHD7_CIOIN	WD_REPEATS_REGION domain-containing protein. (1093 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	LOC100177721	WD_REPEATS_REGION domain-containing protein. (620 aa)
	F7AV41_CIOIN	Uncharacterized protein. (773 aa)
	F7AWC6_CIOIN	WD_REPEATS_REGION domain-containing protein. (272 aa)
	F7BQ53_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	LOC100187346	Uncharacterized protein. (580 aa)
	LOC100184960	Chromatin assembly factor 1 subunit B-like isoform X1. (493 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	F6R982_CIOIN	WD_REPEATS_REGION domain-containing protein. (433 aa)
	F6PM95_CIOIN	WD_REPEATS_REGION domain-containing protein. (322 aa)
	LOC100186285	Target of rapamycin complex subunit lst8. (322 aa)
	LOC100181559	WD repeat-containing protein 38. (332 aa)
	F6YNT4_CIOIN	Coronin; Belongs to the WD repeat coronin family. (925 aa)
	F7AB73_CIOIN	Uncharacterized protein. (1887 aa)
	F6TSV6_CIOIN	WD_REPEATS_REGION domain-containing protein. (687 aa)
	F6YGZ1_CIOIN	Uncharacterized protein. (587 aa)
	LOC100179473	Guanine nucleotide-binding protein subunit beta-2-like 1. (323 aa)
	LOC100182745	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1. (347 aa)
	F6TIU3_CIOIN	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (326 aa)
	F6U8U5_CIOIN	WD_REPEATS_REGION domain-containing protein. (378 aa)
	LOC100187342	WD_REPEATS_REGION domain-containing protein. (330 aa)
	F7BBJ6_CIOIN	WD_REPEATS_REGION domain-containing protein. (473 aa)
	F6QHS0_CIOIN	Uncharacterized protein. (394 aa)
	F6SIX8_CIOIN	WD_REPEATS_REGION domain-containing protein. (429 aa)
	LOC100180093	WD40 repeat-containing protein SMU1. (513 aa)
	F6Z465_CIOIN	Uncharacterized protein. (336 aa)
	F6WWK0_CIOIN	WD_REPEATS_REGION domain-containing protein. (508 aa)
	F6YUN5_CIOIN	WD_REPEATS_REGION domain-containing protein. (355 aa)
	LOC100179169	WD_REPEATS_REGION domain-containing protein. (442 aa)
	F6UNP2_CIOIN	WD_REPEATS_REGION domain-containing protein. (464 aa)
	LOC100183259	Uncharacterized protein. (721 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PM95_CIOIN	F6U8U5_CIOIN	ENSCINP00000009857	ENSCINP00000007457	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.556
F6PM95_CIOIN	F6W8G0_CIOIN	ENSCINP00000009857	ENSCINP00000019657	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.472
F6PM95_CIOIN	LOC100184010	ENSCINP00000009857	ENSCINP00000012870	WD_REPEATS_REGION domain-containing protein.	mRNA export factor.	0.587
F6PM95_CIOIN	LOC100185530	ENSCINP00000009857	ENSCINP00000021958	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.475
F6QH89_CIOIN	F6QHS0_CIOIN	ENSCINP00000016914	ENSCINP00000004926	Uncharacterized protein.	Uncharacterized protein.	0.500
F6QH89_CIOIN	F6TVK8_CIOIN	ENSCINP00000016914	ENSCINP00000015452	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.411
F6QH89_CIOIN	F6VUV2_CIOIN	ENSCINP00000016914	ENSCINP00000024005	Uncharacterized protein.	Uncharacterized protein.	0.469
F6QH89_CIOIN	F6WY47_CIOIN	ENSCINP00000016914	ENSCINP00000019032	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.856
F6QH89_CIOIN	F6Y5P5_CIOIN	ENSCINP00000016914	ENSCINP00000019932	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.460
F6QH89_CIOIN	F6Y9U9_CIOIN	ENSCINP00000016914	ENSCINP00000026171	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.453
F6QH89_CIOIN	F7B1X4_CIOIN	ENSCINP00000016914	ENSCINP00000012774	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.431
F6QH89_CIOIN	H2Y1F1_CIOIN	ENSCINP00000016914	ENSCINP00000035735	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.659
F6QH89_CIOIN	LOC100186524	ENSCINP00000016914	ENSCINP00000015872	Uncharacterized protein.	DDB1- and CUL4-associated factor 7.	0.492
F6QH89_CIOIN	LOC100187342	ENSCINP00000016914	ENSCINP00000006793	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.418
F6QH89_CIOIN	LOC104265886	ENSCINP00000016914	ENSCINP00000016261	Uncharacterized protein.	Histone-binding protein RBBP4.	0.536
F6QH89_CIOIN	ckn1	ENSCINP00000016914	ENSCINP00000018875	Uncharacterized protein.	Cockayne syndrome 1 homolog.	0.423
F6QHS0_CIOIN	F6QH89_CIOIN	ENSCINP00000004926	ENSCINP00000016914	Uncharacterized protein.	Uncharacterized protein.	0.500
F6QHS0_CIOIN	F6RBK2_CIOIN	ENSCINP00000004926	ENSCINP00000023978	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.477
F6QHS0_CIOIN	F6RFI3_CIOIN	ENSCINP00000004926	ENSCINP00000025145	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.403
F6QHS0_CIOIN	F6TVK8_CIOIN	ENSCINP00000004926	ENSCINP00000015452	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.413