3 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XM91_CIOIN	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (627 aa)
	LOC100183602	E2_bind domain-containing protein. (446 aa)
	LOC100176463	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family. (1036 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2XM91_CIOIN	LOC100176463	ENSCINP00000030774	ENSCINP00000016116	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.532
LOC100176463	H2XM91_CIOIN	ENSCINP00000016116	ENSCINP00000030774	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.532
LOC100176463	LOC100183602	ENSCINP00000016116	ENSCINP00000012570	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	E2_bind domain-containing protein.	0.933
LOC100183602	LOC100176463	ENSCINP00000012570	ENSCINP00000016116	E2_bind domain-containing protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.933