(10 nodes) Serpin superfamily network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100179418	Leukocyte elastase inhibitor-like isoform X1; Belongs to the serpin family. (408 aa)
	LOC100177185	SERPIN domain-containing protein; Belongs to the serpin family. (400 aa)
	LOC100176269	Leukocyte elastase inhibitor-like; Belongs to the serpin family. (409 aa)
	F6PKX9_CIOIN	SERPIN domain-containing protein; Belongs to the serpin family. (147 aa)
	F6PW14_CIOIN	SERPIN domain-containing protein; Belongs to the serpin family. (416 aa)
	H2Y178_CIOIN	SERPIN domain-containing protein; Belongs to the serpin family. (411 aa)
	Not2	SERPIN domain-containing protein; Belongs to the serpin family. (412 aa)
	LOC100179000	SERPIN domain-containing protein; Belongs to the serpin family. (375 aa)
	F6TH49_CIOIN	SERPIN domain-containing protein; Belongs to the serpin family. (241 aa)
	F7BHT5_CIOIN	SERPIN domain-containing protein; Belongs to the serpin family. (372 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKX9_CIOIN	F6TH49_CIOIN	ENSCINP00000006259	ENSCINP00000028102	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.535
F6TH49_CIOIN	F6PKX9_CIOIN	ENSCINP00000028102	ENSCINP00000006259	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.535
F6TH49_CIOIN	H2Y178_CIOIN	ENSCINP00000028102	ENSCINP00000035662	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.536
F6TH49_CIOIN	Not2	ENSCINP00000028102	ENSCINP00000034368	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.536
H2Y178_CIOIN	F6TH49_CIOIN	ENSCINP00000035662	ENSCINP00000028102	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.536
Not2	F6TH49_CIOIN	ENSCINP00000034368	ENSCINP00000028102	SERPIN domain-containing protein; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.536