30 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	H2Y233_CIOIN	Nuclear cap-binding protein subunit 2. (185 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	LOC100184165	General transcription factor IIH subunit 3-like. (309 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	LOC100178802	Transcription elongation factor SPT5. (1047 aa)
	spt4	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (122 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	F6PKT6_CIOIN	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (822 aa)
	zf(ring)-55	Zinc finger protein. (323 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	F6S7T3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
	F6S7U3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100182171	Negative elongation factor E-like. (308 aa)
	LOC100177816	cyclin-H; Belongs to the cyclin family. (329 aa)
	F6SKY6_CIOIN	HDAg domain-containing protein. (537 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	F6RMT1_CIOIN	Uncharacterized protein. (551 aa)
	LOC100186426	Negative elongation factor B. (605 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	LOC100183995	Uncharacterized protein. (575 aa)
	Zf(c2h2)-114	General transcription factor IIH subunit. (395 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKJ4_CIOIN	F6PKT6_CIOIN	ENSCINP00000018247	ENSCINP00000018238	MIF4G domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.661
F6PKJ4_CIOIN	F6QR00_CIOIN	ENSCINP00000018247	ENSCINP00000013245	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.724
F6PKJ4_CIOIN	F6RMT1_CIOIN	ENSCINP00000018247	ENSCINP00000009626	MIF4G domain-containing protein.	Uncharacterized protein.	0.651
F6PKJ4_CIOIN	F6SKY6_CIOIN	ENSCINP00000018247	ENSCINP00000010608	MIF4G domain-containing protein.	HDAg domain-containing protein.	0.633
F6PKJ4_CIOIN	F6X618_CIOIN	ENSCINP00000018247	ENSCINP00000003619	MIF4G domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.666
F6PKJ4_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000018247	ENSCINP00000019931	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	H2XZ54_CIOIN	ENSCINP00000018247	ENSCINP00000034938	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	H2Y233_CIOIN	ENSCINP00000018247	ENSCINP00000035968	MIF4G domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.999
F6PKJ4_CIOIN	LOC100177272	ENSCINP00000018247	ENSCINP00000016166	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
F6PKJ4_CIOIN	LOC100178802	ENSCINP00000018247	ENSCINP00000030091	MIF4G domain-containing protein.	Transcription elongation factor SPT5.	0.702
F6PKJ4_CIOIN	LOC100179943	ENSCINP00000018247	ENSCINP00000012710	MIF4G domain-containing protein.	General transcription factor IIF subunit 2.	0.675
F6PKJ4_CIOIN	LOC100182171	ENSCINP00000018247	ENSCINP00000011919	MIF4G domain-containing protein.	Negative elongation factor E-like.	0.951
F6PKJ4_CIOIN	LOC100183594	ENSCINP00000018247	ENSCINP00000005835	MIF4G domain-containing protein.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.654
F6PKJ4_CIOIN	LOC100183995	ENSCINP00000018247	ENSCINP00000002121	MIF4G domain-containing protein.	Uncharacterized protein.	0.734
F6PKJ4_CIOIN	LOC100184165	ENSCINP00000018247	ENSCINP00000033718	MIF4G domain-containing protein.	General transcription factor IIH subunit 3-like.	0.653
F6PKJ4_CIOIN	LOC100186426	ENSCINP00000018247	ENSCINP00000008498	MIF4G domain-containing protein.	Negative elongation factor B.	0.802
F6PKJ4_CIOIN	spt4	ENSCINP00000018247	ENSCINP00000029943	MIF4G domain-containing protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.684
F6PKT6_CIOIN	F6PKJ4_CIOIN	ENSCINP00000018238	ENSCINP00000018247	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	MIF4G domain-containing protein.	0.661
F6PKT6_CIOIN	F6QR00_CIOIN	ENSCINP00000018238	ENSCINP00000013245	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.921
F6PKT6_CIOIN	F6X618_CIOIN	ENSCINP00000018238	ENSCINP00000003619	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.993