12 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XUV5_CIOIN	25A_SYNTH_3 domain-containing protein. (315 aa)
	LOC100187540	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
	F6U1K7_CIOIN	RBR-type E3 ubiquitin transferase. (510 aa)
	LOC100184673	ATP-binding cassette sub-family E member 1. (600 aa)
	LOC101242392	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
	LOC100177596	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (430 aa)
	F7B4V3_CIOIN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
	F6YAA4_CIOIN	Endo/exonuclease/phosphatase domain-containing protein. (548 aa)
	F6XF93_CIOIN	Uncharacterized protein. (410 aa)
	LOC100184003	Importin subunit alpha; Belongs to the importin alpha family. (519 aa)
	F6R3K6_CIOIN	Uncharacterized protein. (1037 aa)
	H2XZL5_CIOIN	OAS1_C domain-containing protein. (293 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R3K6_CIOIN	F6XF93_CIOIN	ENSCINP00000018021	ENSCINP00000016005	Uncharacterized protein.	Uncharacterized protein.	0.736
F6R3K6_CIOIN	F7B4V3_CIOIN	ENSCINP00000018021	ENSCINP00000008672	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942
F6R3K6_CIOIN	LOC100177596	ENSCINP00000018021	ENSCINP00000005836	Uncharacterized protein.	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	0.904
F6R3K6_CIOIN	LOC100187540	ENSCINP00000018021	ENSCINP00000000571	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.877
F6R3K6_CIOIN	LOC101242392	ENSCINP00000018021	ENSCINP00000004765	Uncharacterized protein.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.652
F6U1K7_CIOIN	LOC101242392	ENSCINP00000001631	ENSCINP00000004765	RBR-type E3 ubiquitin transferase.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.716
F6XF93_CIOIN	F6R3K6_CIOIN	ENSCINP00000016005	ENSCINP00000018021	Uncharacterized protein.	Uncharacterized protein.	0.736
F6XF93_CIOIN	F7B4V3_CIOIN	ENSCINP00000016005	ENSCINP00000008672	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.836
F6XF93_CIOIN	LOC100177596	ENSCINP00000016005	ENSCINP00000005836	Uncharacterized protein.	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	0.862
F6XF93_CIOIN	LOC100187540	ENSCINP00000016005	ENSCINP00000000571	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.754
F7B4V3_CIOIN	F6R3K6_CIOIN	ENSCINP00000008672	ENSCINP00000018021	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.942
F7B4V3_CIOIN	F6XF93_CIOIN	ENSCINP00000008672	ENSCINP00000016005	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.836
F7B4V3_CIOIN	LOC100177596	ENSCINP00000008672	ENSCINP00000005836	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	0.962
F7B4V3_CIOIN	LOC100187540	ENSCINP00000008672	ENSCINP00000000571	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.907
F7B4V3_CIOIN	LOC101242392	ENSCINP00000008672	ENSCINP00000004765	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family.	0.910
LOC100177596	F6R3K6_CIOIN	ENSCINP00000005836	ENSCINP00000018021	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.904
LOC100177596	F6XF93_CIOIN	ENSCINP00000005836	ENSCINP00000016005	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.862
LOC100177596	F7B4V3_CIOIN	ENSCINP00000005836	ENSCINP00000008672	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.962
LOC100177596	LOC100184673	ENSCINP00000005836	ENSCINP00000003095	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	ATP-binding cassette sub-family E member 1.	0.512
LOC100177596	LOC100187540	ENSCINP00000005836	ENSCINP00000000571	Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.875