32 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100181499	Uncharacterized protein LOC100181499. (166 aa)
	LOC100176030	WD_REPEATS_REGION domain-containing protein. (1206 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	LOC100181712	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
	LOC100179217	GTP-binding protein Rheb. (183 aa)
	LOC100184788	Non-specific serine/threonine protein kinase. (554 aa)
	F7B4V3_CIOIN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
	LOC100186285	Target of rapamycin complex subunit lst8. (322 aa)
	LOC100187265	Uncharacterized protein. (949 aa)
	Dkc1	Uncharacterized protein. (189 aa)
	F6U1X7_CIOIN	Uncharacterized protein. (132 aa)
	LOC100184659	AMPKBI domain-containing protein. (227 aa)
	LOC100180665	Ras-related GTP-binding protein C. (371 aa)
	F6ZFJ9_CIOIN	Alpha-type protein kinase domain-containing protein. (678 aa)
	F6V299_CIOIN	Protein kinase domain-containing protein. (523 aa)
	F6UCD8_CIOIN	Uncharacterized protein. (681 aa)
	F6RS66_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (462 aa)
	LOC100186482	Sodium-coupled neutral amino acid transporter 9-like. (460 aa)
	F6W912_CIOIN	Protein kinase domain-containing protein. (285 aa)
	F7BH38_CIOIN	Uncharacterized protein. (326 aa)
	F6ZAD3_CIOIN	Rap-GAP domain-containing protein. (1434 aa)
	F6RZE8_CIOIN	RRM domain-containing protein. (329 aa)
	F6TGX2_CIOIN	Uncharacterized protein. (315 aa)
	F6S4F7_CIOIN	Non-specific serine/threonine protein kinase. (512 aa)
	LOC100177011	Ragulator complex protein LAMTOR2-B. (127 aa)
	H2XKN7_CIOIN	Uncharacterized protein. (116 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XPH2_CIOIN	DUF3385 domain-containing protein. (265 aa)
	H2XTK8_CIOIN	Thioredoxin domain-containing protein. (221 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2XXK5_CIOIN	Thioredoxin domain-containing protein. (429 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dkc1	F6RS66_CIOIN	ENSCINP00000009520	ENSCINP00000013103	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.841
Dkc1	F6U1X7_CIOIN	ENSCINP00000009520	ENSCINP00000009527	Uncharacterized protein.	Uncharacterized protein.	0.926
Dkc1	F6V299_CIOIN	ENSCINP00000009520	ENSCINP00000012931	Uncharacterized protein.	Protein kinase domain-containing protein.	0.797
Dkc1	F6W912_CIOIN	ENSCINP00000009520	ENSCINP00000014554	Uncharacterized protein.	Protein kinase domain-containing protein.	0.944
Dkc1	LOC100184788	ENSCINP00000009520	ENSCINP00000006320	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.951
F6RS66_CIOIN	Dkc1	ENSCINP00000013103	ENSCINP00000009520	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.841
F6RS66_CIOIN	F6S4F7_CIOIN	ENSCINP00000013103	ENSCINP00000016461	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.561
F6RS66_CIOIN	F6TGX2_CIOIN	ENSCINP00000013103	ENSCINP00000016134	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.455
F6RS66_CIOIN	F6U1X7_CIOIN	ENSCINP00000013103	ENSCINP00000009527	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.841
F6RS66_CIOIN	F6UCD8_CIOIN	ENSCINP00000013103	ENSCINP00000012975	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.602
F6RS66_CIOIN	F6W912_CIOIN	ENSCINP00000013103	ENSCINP00000014554	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.939
F6RS66_CIOIN	F6ZAD3_CIOIN	ENSCINP00000013103	ENSCINP00000014731	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Rap-GAP domain-containing protein.	0.687
F6RS66_CIOIN	F7BH38_CIOIN	ENSCINP00000013103	ENSCINP00000014670	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.602
F6RS66_CIOIN	LOC100176030	ENSCINP00000013103	ENSCINP00000001261	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.651
F6RS66_CIOIN	LOC100179217	ENSCINP00000013103	ENSCINP00000004477	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	GTP-binding protein Rheb.	0.536
F6RS66_CIOIN	LOC100184659	ENSCINP00000013103	ENSCINP00000010235	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AMPKBI domain-containing protein.	0.802
F6RS66_CIOIN	LOC100184788	ENSCINP00000013103	ENSCINP00000006320	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.730
F6RS66_CIOIN	LOC100187265	ENSCINP00000013103	ENSCINP00000009399	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.490
F6RZE8_CIOIN	F6ZFJ9_CIOIN	ENSCINP00000015203	ENSCINP00000012557	RRM domain-containing protein.	Alpha-type protein kinase domain-containing protein.	0.418
F6RZE8_CIOIN	F7B4V3_CIOIN	ENSCINP00000015203	ENSCINP00000008672	RRM domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.897