20 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XXK5_CIOIN	Thioredoxin domain-containing protein. (429 aa)
	LOC100176030	WD_REPEATS_REGION domain-containing protein. (1206 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	LOC100181712	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)
	LOC100179217	GTP-binding protein Rheb. (183 aa)
	F7B4V3_CIOIN	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
	LOC100186285	Target of rapamycin complex subunit lst8. (322 aa)
	LOC100181499	Uncharacterized protein LOC100181499. (166 aa)
	LOC100180665	Ras-related GTP-binding protein C. (371 aa)
	F6ZFJ9_CIOIN	Alpha-type protein kinase domain-containing protein. (678 aa)
	LOC100186482	Sodium-coupled neutral amino acid transporter 9-like. (460 aa)
	F6RZE8_CIOIN	RRM domain-containing protein. (329 aa)
	F6TGX2_CIOIN	Uncharacterized protein. (315 aa)
	LOC100177011	Ragulator complex protein LAMTOR2-B. (127 aa)
	H2XKN7_CIOIN	Uncharacterized protein. (116 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XPH2_CIOIN	DUF3385 domain-containing protein. (265 aa)
	H2XTK8_CIOIN	Thioredoxin domain-containing protein. (221 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RZE8_CIOIN	F6ZFJ9_CIOIN	ENSCINP00000015203	ENSCINP00000012557	RRM domain-containing protein.	Alpha-type protein kinase domain-containing protein.	0.418
F6RZE8_CIOIN	F7B4V3_CIOIN	ENSCINP00000015203	ENSCINP00000008672	RRM domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.897
F6RZE8_CIOIN	LOC100181712	ENSCINP00000015203	ENSCINP00000003510	RRM domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.736
F6TGX2_CIOIN	F6VK85_CIOIN	ENSCINP00000016134	ENSCINP00000002868	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.974
F6TGX2_CIOIN	F7B4V3_CIOIN	ENSCINP00000016134	ENSCINP00000008672	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.585
F6TGX2_CIOIN	H2XKN7_CIOIN	ENSCINP00000016134	ENSCINP00000030219	Uncharacterized protein.	Uncharacterized protein.	0.524
F6TGX2_CIOIN	H2XM17_CIOIN	ENSCINP00000016134	ENSCINP00000030699	Uncharacterized protein.	FAT domain-containing protein.	0.753
F6TGX2_CIOIN	H2XPH2_CIOIN	ENSCINP00000016134	ENSCINP00000031555	Uncharacterized protein.	DUF3385 domain-containing protein.	0.753
F6TGX2_CIOIN	H2XWT8_CIOIN	ENSCINP00000016134	ENSCINP00000034122	Uncharacterized protein.	Uncharacterized protein.	0.753
F6TGX2_CIOIN	H2Y066_CIOIN	ENSCINP00000016134	ENSCINP00000035300	Uncharacterized protein.	Uncharacterized protein.	0.753
F6TGX2_CIOIN	LOC100176030	ENSCINP00000016134	ENSCINP00000001261	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.980
F6TGX2_CIOIN	LOC100177011	ENSCINP00000016134	ENSCINP00000023727	Uncharacterized protein.	Ragulator complex protein LAMTOR2-B.	0.995
F6TGX2_CIOIN	LOC100179217	ENSCINP00000016134	ENSCINP00000004477	Uncharacterized protein.	GTP-binding protein Rheb.	0.860
F6TGX2_CIOIN	LOC100180665	ENSCINP00000016134	ENSCINP00000010644	Uncharacterized protein.	Ras-related GTP-binding protein C.	0.999
F6TGX2_CIOIN	LOC100181499	ENSCINP00000016134	ENSCINP00000035422	Uncharacterized protein.	Uncharacterized protein LOC100181499.	0.993
F6TGX2_CIOIN	LOC100181712	ENSCINP00000016134	ENSCINP00000003510	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.444
F6TGX2_CIOIN	LOC100186285	ENSCINP00000016134	ENSCINP00000009283	Uncharacterized protein.	Target of rapamycin complex subunit lst8.	0.989
F6TGX2_CIOIN	LOC100186482	ENSCINP00000016134	ENSCINP00000013975	Uncharacterized protein.	Sodium-coupled neutral amino acid transporter 9-like.	0.929
F6VK85_CIOIN	F6TGX2_CIOIN	ENSCINP00000002868	ENSCINP00000016134	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.974
F6VK85_CIOIN	F7B4V3_CIOIN	ENSCINP00000002868	ENSCINP00000008672	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.549