25 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XTG3_CIOIN	Uncharacterized protein. (233 aa)
	H2XVA8_CIOIN	Uncharacterized protein. (53 aa)
	F6YDG1_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (586 aa)
	LOC100187071	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (187 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	r27a	R27a protein isoform X1. (155 aa)
	F7B1X4_CIOIN	WD_REPEATS_REGION domain-containing protein. (523 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	LOC100182501	TPR_REGION domain-containing protein. (560 aa)
	F6XWY9_CIOIN	TPR_REGION domain-containing protein. (823 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	F6SSU2_CIOIN	TPR_REGION domain-containing protein. (387 aa)
	F6T453_CIOIN	Uncharacterized protein; Belongs to the cyclin family. (430 aa)
	F6PKV2_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (144 aa)
	LOC100176838	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (202 aa)
	LOC100180099	Ubiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (214 aa)
	LOC100186469	WD_REPEATS_REGION domain-containing protein. (338 aa)
	F6XGY9_CIOIN	Uncharacterized protein. (373 aa)
	F6UNB7_CIOIN	ANAPC5 domain-containing protein. (294 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	LOC113474176	kxDL motif-containing protein 1-like. (139 aa)
	H2XRK6_CIOIN	HORMA domain-containing protein. (87 aa)
	F6ZE60_CIOIN	ANAPC4 domain-containing protein. (494 aa)
	F6UNP2_CIOIN	WD_REPEATS_REGION domain-containing protein. (464 aa)
	LOC100181511	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKV2_CIOIN	F6SSU2_CIOIN	ENSCINP00000018235	ENSCINP00000016408	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TPR_REGION domain-containing protein.	0.975
F6PKV2_CIOIN	F6T453_CIOIN	ENSCINP00000018235	ENSCINP00000017285	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.888
F6PKV2_CIOIN	F6UNB7_CIOIN	ENSCINP00000018235	ENSCINP00000025938	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ANAPC5 domain-containing protein.	0.948
F6PKV2_CIOIN	F6UNP2_CIOIN	ENSCINP00000018235	ENSCINP00000001981	UBIQUITIN_CONJUGAT_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.957
F6PKV2_CIOIN	F6VJQ1_CIOIN	ENSCINP00000018235	ENSCINP00000026820	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.720
F6PKV2_CIOIN	F6XGY9_CIOIN	ENSCINP00000018235	ENSCINP00000021930	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.850
F6PKV2_CIOIN	F6XWY9_CIOIN	ENSCINP00000018235	ENSCINP00000015343	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TPR_REGION domain-containing protein.	0.962
F6PKV2_CIOIN	F6YDG1_CIOIN	ENSCINP00000018235	ENSCINP00000005419	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.974
F6PKV2_CIOIN	F6ZE60_CIOIN	ENSCINP00000018235	ENSCINP00000000838	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ANAPC4 domain-containing protein.	0.976
F6PKV2_CIOIN	F6ZJN8_CIOIN	ENSCINP00000018235	ENSCINP00000015598	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.725
F6PKV2_CIOIN	F7B1X4_CIOIN	ENSCINP00000018235	ENSCINP00000012774	UBIQUITIN_CONJUGAT_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
F6PKV2_CIOIN	H2XRK6_CIOIN	ENSCINP00000018235	ENSCINP00000032290	UBIQUITIN_CONJUGAT_2 domain-containing protein.	HORMA domain-containing protein.	0.837
F6PKV2_CIOIN	H2XTG3_CIOIN	ENSCINP00000018235	ENSCINP00000032947	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.760
F6PKV2_CIOIN	H2XVA8_CIOIN	ENSCINP00000018235	ENSCINP00000033592	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.699
F6PKV2_CIOIN	LOC100176838	ENSCINP00000018235	ENSCINP00000018593	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.947
F6PKV2_CIOIN	LOC100180099	ENSCINP00000018235	ENSCINP00000019401	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family.	0.934
F6PKV2_CIOIN	LOC100181511	ENSCINP00000018235	ENSCINP00000003403	UBIQUITIN_CONJUGAT_2 domain-containing protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.528
F6PKV2_CIOIN	LOC100182501	ENSCINP00000018235	ENSCINP00000014260	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TPR_REGION domain-containing protein.	0.951
F6PKV2_CIOIN	LOC100185384	ENSCINP00000018235	ENSCINP00000010307	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ubiquitin-60S ribosomal protein L40.	0.746
F6PKV2_CIOIN	LOC100186469	ENSCINP00000018235	ENSCINP00000019571	UBIQUITIN_CONJUGAT_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.720