45 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	r27a	R27a protein isoform X1. (155 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	F6YAQ4_CIOIN	Uncharacterized protein. (240 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	H2Y233_CIOIN	Nuclear cap-binding protein subunit 2. (185 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2XZ02_CIOIN	WH1 domain-containing protein. (414 aa)
	H2XVY8_CIOIN	Uncharacterized protein. (331 aa)
	LOC100181195	Uncharacterized protein. (739 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	H2XVD0_CIOIN	Uncharacterized protein. (535 aa)
	LOC100183719	Uncharacterized protein. (231 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	fgf3/7/10/22	Fibroblast growth factor 3/7/10/22; Belongs to the heparin-binding growth factors family. (268 aa)
	F6SXX6_CIOIN	Protein kinase domain-containing protein. (232 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F7BEX9_CIOIN	Uncharacterized protein. (381 aa)
	F6YAH3_CIOIN	Uncharacterized protein. (840 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	H2XKK1_CIOIN	Uncharacterized protein. (267 aa)
	LOC100186064	Serine/threonine-protein phosphatase. (314 aa)
	F7AVM0_CIOIN	Uncharacterized protein. (535 aa)
	F7AVR8_CIOIN	Uncharacterized protein. (175 aa)
	F6QZW7_CIOIN	IRS-type PTB domain-containing protein. (342 aa)
	F6S4S1_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (446 aa)
	F6W4G9_CIOIN	Uncharacterized protein. (411 aa)
	F6W6H7_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (279 aa)
	F6WTB4_CIOIN	Uncharacterized protein. (199 aa)
	F6WTH1_CIOIN	RRM domain-containing protein. (180 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	H2XKP9_CIOIN	Uncharacterized protein. (329 aa)
	fgfr	Fibroblast growth factor receptor; Receptor for basic fibroblast growth factor. (665 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	fgf4/5/6	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (229 aa)
	LOC100182493	Growth factor receptor-bound protein 2-like isoform X1. (152 aa)
	Fgf9/16/20	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (297 aa)
	LOC100178753	Ig-like domain-containing protein. (150 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKJ4_CIOIN	F6QR00_CIOIN	ENSCINP00000018247	ENSCINP00000013245	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.724
F6PKJ4_CIOIN	F6W4G9_CIOIN	ENSCINP00000018247	ENSCINP00000004384	MIF4G domain-containing protein.	Uncharacterized protein.	0.571
F6PKJ4_CIOIN	F6WTB4_CIOIN	ENSCINP00000018247	ENSCINP00000004050	MIF4G domain-containing protein.	Uncharacterized protein.	0.458
F6PKJ4_CIOIN	F6WTH1_CIOIN	ENSCINP00000018247	ENSCINP00000004046	MIF4G domain-containing protein.	RRM domain-containing protein.	0.458
F6PKJ4_CIOIN	F6X618_CIOIN	ENSCINP00000018247	ENSCINP00000003619	MIF4G domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.666
F6PKJ4_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000018247	ENSCINP00000019931	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	H2XVD0_CIOIN	ENSCINP00000018247	ENSCINP00000033614	MIF4G domain-containing protein.	Uncharacterized protein.	0.458
F6PKJ4_CIOIN	H2XZ54_CIOIN	ENSCINP00000018247	ENSCINP00000034938	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	H2Y233_CIOIN	ENSCINP00000018247	ENSCINP00000035968	MIF4G domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.999
F6PKJ4_CIOIN	LOC100177272	ENSCINP00000018247	ENSCINP00000016166	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
F6PKJ4_CIOIN	LOC100179943	ENSCINP00000018247	ENSCINP00000012710	MIF4G domain-containing protein.	General transcription factor IIF subunit 2.	0.675
F6PKJ4_CIOIN	LOC100186064	ENSCINP00000018247	ENSCINP00000008274	MIF4G domain-containing protein.	Serine/threonine-protein phosphatase.	0.616
F6QR00_CIOIN	F6PKJ4_CIOIN	ENSCINP00000013245	ENSCINP00000018247	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MIF4G domain-containing protein.	0.724
F6QR00_CIOIN	F6VJQ1_CIOIN	ENSCINP00000013245	ENSCINP00000026820	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.515
F6QR00_CIOIN	F6X618_CIOIN	ENSCINP00000013245	ENSCINP00000003619	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.995
F6QR00_CIOIN	F6XIG6_CIOIN	ENSCINP00000013245	ENSCINP00000021902	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
F6QR00_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000013245	ENSCINP00000019931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	F6ZJN8_CIOIN	ENSCINP00000013245	ENSCINP00000015598	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.528
F6QR00_CIOIN	H2XJG6_CIOIN	ENSCINP00000013245	ENSCINP00000029798	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XVJ2_CIOIN	ENSCINP00000013245	ENSCINP00000033676	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999