63 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7AZS8_CIOIN	Uncharacterized protein. (199 aa)
	LOC100184190	AAA domain-containing protein; Belongs to the AAA ATPase family. (419 aa)
	LOC100182082	AAA domain-containing protein; Belongs to the AAA ATPase family. (463 aa)
	F7BHP4_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (428 aa)
	F6XKP0_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (397 aa)
	F6S376_CIOIN	PA28_alpha domain-containing protein. (82 aa)
	F6PP61_CIOIN	Proteasome subunit beta; Belongs to the peptidase T1B family. (260 aa)
	Tcf/lef	HMG box domain-containing protein. (351 aa)
	gsk	Glycogen synthase kinase Alpha/beta. (407 aa)
	LOC100181511	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	F6Z3V6_CIOIN	Uncharacterized protein. (1821 aa)
	LOC100186374	26S proteasome non-ATPase regulatory subunit 11. (420 aa)
	Zf(rbz)-3	Uncharacterized protein. (687 aa)
	LOC100184556	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (442 aa)
	LOC113474124	Proteasome subunit beta. (205 aa)
	LOC100187162	AAA domain-containing protein; Belongs to the AAA ATPase family. (393 aa)
	F6Z491_CIOIN	Proteasome subunit alpha type. (242 aa)
	LOC100186602	Proteasome subunit beta. (268 aa)
	LOC100176760	Proteasome subunit alpha type. (253 aa)
	groucho2	Uncharacterized protein. (835 aa)
	groucho1	Groucho. (847 aa)
	LOC100182845	Proteasome subunit alpha type-4-like. (91 aa)
	F6VHP9_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (340 aa)
	F6W3R8_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (317 aa)
	LOC100177476	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (251 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	F6T957_CIOIN	Uncharacterized protein. (589 aa)
	Cibeta-catenin	Uncharacterized protein. (497 aa)
	LOC100186064	Serine/threonine-protein phosphatase. (314 aa)
	LOC100187507	Uncharacterized protein. (510 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	F6QS20_CIOIN	VWFA domain-containing protein. (370 aa)
	LOC100183552	ANK_REP_REGION domain-containing protein. (230 aa)
	F7BLS5_CIOIN	PCI domain-containing protein. (398 aa)
	F6V7V9_CIOIN	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (592 aa)
	r27a	R27a protein isoform X1. (155 aa)
	LOC100185096	26S proteasome regulatory subunit 7; Belongs to the AAA ATPase family. (433 aa)
	F6UT95_CIOIN	Uncharacterized protein. (74 aa)
	F6UTA2_CIOIN	Uncharacterized protein. (216 aa)
	F6RUQ3_CIOIN	Proteasome subunit alpha type. (251 aa)
	F6YHS8_CIOIN	PCI domain-containing protein. (458 aa)
	LOC100183036	Proteasome subunit alpha type. (220 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	F7A955_CIOIN	Proteasome subunit beta. (221 aa)
	LOC100184510	PCI domain-containing protein. (386 aa)
	LOC100184104	PCI domain-containing protein. (376 aa)
	H2Y3S9_CIOIN	RPN2_C domain-containing protein. (79 aa)
	LOC100179460	Proteasome subunit beta. (200 aa)
	H2XYW0_CIOIN	MPN domain-containing protein. (323 aa)
	zeta	Proteasome subunit beta. (276 aa)
	LOC100179585	Proteasome subunit alpha type. (233 aa)
	H2XSU1_CIOIN	Proteasome subunit beta. (239 aa)
	H2XRC5_CIOIN	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (425 aa)
	LOC100182516	RING-box protein 1. (104 aa)
	LOC100179683	26S proteasome non-ATPase regulatory subunit 14. (310 aa)
	H2XLA2_CIOIN	Uncharacterized protein. (206 aa)
	H2XJH2_CIOIN	Uncharacterized protein. (216 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	F6TZA7_CIOIN	Uncharacterized protein. (273 aa)
	F6V0W8_CIOIN	Uncharacterized protein. (235 aa)
	F6SDU1_CIOIN	PCI domain-containing protein. (270 aa)
	F6YFA0_CIOIN	Uncharacterized protein. (62 aa)
	F6YFA6_CIOIN	APC_N_CC domain-containing protein. (151 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cibeta-catenin	F6PW28_CIOIN	ENSCINP00000014417	ENSCINP00000013359	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.585
Cibeta-catenin	F6T957_CIOIN	ENSCINP00000014417	ENSCINP00000015461	Uncharacterized protein.	Uncharacterized protein.	0.490
Cibeta-catenin	F6TZA7_CIOIN	ENSCINP00000014417	ENSCINP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.963
Cibeta-catenin	F6VHP9_CIOIN	ENSCINP00000014417	ENSCINP00000016380	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.721
Cibeta-catenin	F6VJQ1_CIOIN	ENSCINP00000014417	ENSCINP00000026820	Uncharacterized protein.	Uncharacterized protein.	0.428
Cibeta-catenin	F6W3R8_CIOIN	ENSCINP00000014417	ENSCINP00000016371	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.970
Cibeta-catenin	F6YFA0_CIOIN	ENSCINP00000014417	ENSCINP00000024272	Uncharacterized protein.	Uncharacterized protein.	0.863
Cibeta-catenin	F6YFA6_CIOIN	ENSCINP00000014417	ENSCINP00000024271	Uncharacterized protein.	APC_N_CC domain-containing protein.	0.714
Cibeta-catenin	F6ZJN8_CIOIN	ENSCINP00000014417	ENSCINP00000015598	Uncharacterized protein.	Uncharacterized protein.	0.460
Cibeta-catenin	F7AZS8_CIOIN	ENSCINP00000014417	ENSCINP00000014027	Uncharacterized protein.	Uncharacterized protein.	0.863
Cibeta-catenin	F7BHP4_CIOIN	ENSCINP00000014417	ENSCINP00000007206	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.444
Cibeta-catenin	LOC100181511	ENSCINP00000014417	ENSCINP00000003403	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.907
Cibeta-catenin	LOC100182516	ENSCINP00000014417	ENSCINP00000031380	Uncharacterized protein.	RING-box protein 1.	0.509
Cibeta-catenin	LOC100184556	ENSCINP00000014417	ENSCINP00000022803	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.674
Cibeta-catenin	LOC100185384	ENSCINP00000014417	ENSCINP00000010307	Uncharacterized protein.	ubiquitin-60S ribosomal protein L40.	0.464
Cibeta-catenin	LOC100186064	ENSCINP00000014417	ENSCINP00000008274	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.493
Cibeta-catenin	LOC100187162	ENSCINP00000014417	ENSCINP00000019413	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.421
Cibeta-catenin	Tcf/lef	ENSCINP00000014417	ENSCINP00000004053	Uncharacterized protein.	HMG box domain-containing protein.	0.998
Cibeta-catenin	groucho1	ENSCINP00000014417	ENSCINP00000017742	Uncharacterized protein.	Groucho.	0.678
Cibeta-catenin	groucho2	ENSCINP00000014417	ENSCINP00000017756	Uncharacterized protein.	Uncharacterized protein.	0.678