(55 nodes) COPII-mediated vesicle transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XS84_CIOIN	Uncharacterized protein. (195 aa)
	LOC100177880	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (180 aa)
	LOC100179496	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family. (622 aa)
	LOC100182407	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (312 aa)
	LOC100176828	Vesicular integral-membrane protein VIP36. (340 aa)
	LOC100181871	t-SNARE coiled-coil homology domain-containing protein. (310 aa)
	F6RCD1_CIOIN	Rab-GAP TBC domain-containing protein. (371 aa)
	F6Z535_CIOIN	Peptidylprolyl isomerase. (418 aa)
	LOC100181148	Syntaxin-17-like. (363 aa)
	F6XHQ2_CIOIN	Uncharacterized protein. (914 aa)
	LOC100181329	Protein TFG. (442 aa)
	LOC100176507	Synaptobrevin homolog YKT6-like isoform X2; Belongs to the synaptobrevin family. (200 aa)
	LOC100176263	Lebercilin isoform X4. (727 aa)
	LOC100181776	BET1 homolog. (102 aa)
	H2Y2Y1_CIOIN	Uncharacterized protein. (181 aa)
	H2Y2A0_CIOIN	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (214 aa)
	H2XZG3_CIOIN	Uncharacterized protein. (242 aa)
	H2XXY9_CIOIN	Uncharacterized protein. (132 aa)
	H2XWC1_CIOIN	GOLD domain-containing protein. (205 aa)
	LOC100186275	Uncharacterized protein. (436 aa)
	H2XUI1_CIOIN	Uncharacterized protein. (122 aa)
	H2XU55_CIOIN	VWFA domain-containing protein. (510 aa)
	H2XU17_CIOIN	Longin domain-containing protein. (62 aa)
	H2XSA8_CIOIN	ANK_REP_REGION domain-containing protein. (992 aa)
	F7AT36_CIOIN	Uncharacterized protein. (302 aa)
	LOC113474008	Trafficking protein particle complex subunit 2-like. (140 aa)
	F6RHH3_CIOIN	Uncharacterized protein. (967 aa)
	LOC100176818	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	F6UNT7_CIOIN	Uncharacterized protein. (626 aa)
	F6WAD4_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (461 aa)
	F6WAC8_CIOIN	CDC48_N domain-containing protein. (222 aa)
	LOC104266675	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (226 aa)
	F6YIU2_CIOIN	WD_REPEATS_REGION domain-containing protein. (1205 aa)
	LOC100179545	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (185 aa)
	LOC100176668	Transmembrane emp24 domain-containing protein 2. (203 aa)
	F7B4B2_CIOIN	Uncharacterized protein. (470 aa)
	LOC100182304	Trafficking protein particle complex subunit 2-like protein. (150 aa)
	LOC100184992	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (214 aa)
	LOC100184829	Protein cornichon homolog 4. (144 aa)
	F6ZPR6_CIOIN	Uncharacterized protein. (160 aa)
	F6UMD7_CIOIN	Uncharacterized protein. (677 aa)
	F6WA29_CIOIN	Uso1_p115_C domain-containing protein. (118 aa)
	F6W9R3_CIOIN	Uncharacterized protein. (181 aa)
	F6VMI7_CIOIN	Uncharacterized protein. (262 aa)
	LOC100183888	Prolactin regulatory element-binding protein-like. (429 aa)
	LOC100177460	Serine/threonine-protein phosphatase. (305 aa)
	LOC100183335	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (772 aa)
	H2XL14_CIOIN	Uncharacterized protein. (126 aa)
	LOC100185850	Ras-related protein ORAB-1. (204 aa)
	H2XLI5_CIOIN	Serine/threonine-protein phosphatase. (305 aa)
	LOC100183093	Trafficking protein particle complex subunit 6B-like. (157 aa)
	ENSCINP00000031645	annotation not available (185 aa)
	H2XQ34_CIOIN	Uncharacterized protein. (295 aa)
	LOC100187163	Ankyrin repeat domain-containing protein 40-like. (200 aa)
	H2XRQ5_CIOIN	Uncharacterized protein. (357 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000031645	F6W9R3_CIOIN	ENSCINP00000031645	ENSCINP00000026512	annotation not available	Uncharacterized protein.	0.476
ENSCINP00000031645	F6WA29_CIOIN	ENSCINP00000031645	ENSCINP00000026509	annotation not available	Uso1_p115_C domain-containing protein.	0.476
ENSCINP00000031645	LOC100181871	ENSCINP00000031645	ENSCINP00000005346	annotation not available	t-SNARE coiled-coil homology domain-containing protein.	0.694
ENSCINP00000031645	LOC100184992	ENSCINP00000031645	ENSCINP00000019516	annotation not available	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.400
F6RCD1_CIOIN	LOC100185850	ENSCINP00000006334	ENSCINP00000030419	Rab-GAP TBC domain-containing protein.	Ras-related protein ORAB-1.	0.958
F6RHH3_CIOIN	F6UMD7_CIOIN	ENSCINP00000011966	ENSCINP00000025954	Uncharacterized protein.	Uncharacterized protein.	0.971
F6RHH3_CIOIN	F6VMI7_CIOIN	ENSCINP00000011966	ENSCINP00000026549	Uncharacterized protein.	Uncharacterized protein.	0.624
F6RHH3_CIOIN	F6W9R3_CIOIN	ENSCINP00000011966	ENSCINP00000026512	Uncharacterized protein.	Uncharacterized protein.	0.596
F6RHH3_CIOIN	F6WA29_CIOIN	ENSCINP00000011966	ENSCINP00000026509	Uncharacterized protein.	Uso1_p115_C domain-containing protein.	0.574
F6RHH3_CIOIN	F6XHQ2_CIOIN	ENSCINP00000011966	ENSCINP00000007633	Uncharacterized protein.	Uncharacterized protein.	0.992
F6RHH3_CIOIN	F6YIU2_CIOIN	ENSCINP00000011966	ENSCINP00000015312	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
F6RHH3_CIOIN	F7B4B2_CIOIN	ENSCINP00000011966	ENSCINP00000017015	Uncharacterized protein.	Uncharacterized protein.	0.516
F6RHH3_CIOIN	H2XL14_CIOIN	ENSCINP00000011966	ENSCINP00000030346	Uncharacterized protein.	Uncharacterized protein.	0.607
F6RHH3_CIOIN	H2XLI5_CIOIN	ENSCINP00000011966	ENSCINP00000030517	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.449
F6RHH3_CIOIN	H2XQ34_CIOIN	ENSCINP00000011966	ENSCINP00000031768	Uncharacterized protein.	Uncharacterized protein.	0.402
F6RHH3_CIOIN	H2XRQ5_CIOIN	ENSCINP00000011966	ENSCINP00000032339	Uncharacterized protein.	Uncharacterized protein.	0.516
F6RHH3_CIOIN	H2XSA8_CIOIN	ENSCINP00000011966	ENSCINP00000032542	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.405
F6RHH3_CIOIN	H2XU17_CIOIN	ENSCINP00000011966	ENSCINP00000033151	Uncharacterized protein.	Longin domain-containing protein.	0.984
F6RHH3_CIOIN	H2XU55_CIOIN	ENSCINP00000011966	ENSCINP00000033189	Uncharacterized protein.	VWFA domain-containing protein.	0.976
F6RHH3_CIOIN	H2XUI1_CIOIN	ENSCINP00000011966	ENSCINP00000033315	Uncharacterized protein.	Uncharacterized protein.	0.533