43 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y359_CIOIN	Uncharacterized protein. (365 aa)
	F6UFC1_CIOIN	Uncharacterized protein. (482 aa)
	H2XJF1_CIOIN	SF3b1 domain-containing protein. (898 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	F7BJE1_CIOIN	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (213 aa)
	F6WNH2_CIOIN	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (315 aa)
	LOC100183393	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
	F6Z4B6_CIOIN	Uncharacterized protein. (758 aa)
	Zf(c2h2)-34	C2H2-type domain-containing protein. (417 aa)
	LOC100182742	Nucleolar RNA helicase 2. (672 aa)
	F6YSX7_CIOIN	RPOLD domain-containing protein. (345 aa)
	F6ZUL9_CIOIN	Uncharacterized protein. (572 aa)
	F6U6M4_CIOIN	Tet_JBP domain-containing protein. (157 aa)
	swi/snf	Ci-SWI/SNF protein. (1003 aa)
	F6PLM3_CIOIN	Bromo domain-containing protein. (295 aa)
	Zf(cxxc)-5	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1257 aa)
	F6U5V8_CIOIN	Uncharacterized protein. (363 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC100180904	Polycomb protein eed. (424 aa)
	F6SIN5_CIOIN	RNA_pol_Rpb1_5 domain-containing protein. (749 aa)
	LOC104265886	Histone-binding protein RBBP4. (431 aa)
	F6WQW9_CIOIN	Uncharacterized protein. (301 aa)
	F6R407_CIOIN	Uncharacterized protein. (1023 aa)
	F6QYE3_CIOIN	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1038 aa)
	F6R5Q7_CIOIN	Bromo domain-containing protein. (832 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F7AB17_CIOIN	DDT domain-containing protein. (303 aa)
	F6V2C0_CIOIN	Uncharacterized protein. (228 aa)
	F6UZR0_CIOIN	VEFS-Box domain-containing protein. (613 aa)
	F6UZ84_CIOIN	Mtf2_C domain-containing protein. (374 aa)
	F6SLD6_CIOIN	Deacetylase sirtuin-type domain-containing protein. (737 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	H2XJP4_CIOIN	Uncharacterized protein. (368 aa)
	H2XPI7_CIOIN	Tudor domain-containing protein. (264 aa)
	H2XQ41_CIOIN	UDG domain-containing protein. (250 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2Y0J7_CIOIN	RPOLA_N domain-containing protein. (225 aa)
	LOC100184966	Histone H2B-like; Belongs to the histone H2B family. (121 aa)
	F6VCN7_CIOIN	N-acetyltransferase domain-containing protein. (709 aa)
	gsk	Glycogen synthase kinase Alpha/beta. (407 aa)
	F6W6J2_CIOIN	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1147 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PLM3_CIOIN	F6QYE3_CIOIN	ENSCINP00000009891	ENSCINP00000018059	Bromo domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.599
F6PLM3_CIOIN	F6R407_CIOIN	ENSCINP00000009891	ENSCINP00000018013	Bromo domain-containing protein.	Uncharacterized protein.	0.648
F6PLM3_CIOIN	F6UFC1_CIOIN	ENSCINP00000009891	ENSCINP00000005215	Bromo domain-containing protein.	Uncharacterized protein.	0.505
F6PLM3_CIOIN	F6V2C0_CIOIN	ENSCINP00000009891	ENSCINP00000024692	Bromo domain-containing protein.	Uncharacterized protein.	0.434
F6PLM3_CIOIN	F6VCN7_CIOIN	ENSCINP00000009891	ENSCINP00000003167	Bromo domain-containing protein.	N-acetyltransferase domain-containing protein.	0.700
F6PLM3_CIOIN	F6YSX7_CIOIN	ENSCINP00000009891	ENSCINP00000007337	Bromo domain-containing protein.	RPOLD domain-containing protein.	0.422
F6PLM3_CIOIN	H2XJF1_CIOIN	ENSCINP00000009891	ENSCINP00000005223	Bromo domain-containing protein.	SF3b1 domain-containing protein.	0.505
F6PLM3_CIOIN	H2XJP4_CIOIN	ENSCINP00000009891	ENSCINP00000029876	Bromo domain-containing protein.	Uncharacterized protein.	0.628
F6PLM3_CIOIN	H2XXZ3_CIOIN	ENSCINP00000009891	ENSCINP00000034527	Bromo domain-containing protein.	Uncharacterized protein.	0.577
F6PLM3_CIOIN	H2Y359_CIOIN	ENSCINP00000009891	ENSCINP00000036344	Bromo domain-containing protein.	Uncharacterized protein.	0.700
F6PLM3_CIOIN	LOC100182742	ENSCINP00000009891	ENSCINP00000007210	Bromo domain-containing protein.	Nucleolar RNA helicase 2.	0.614
F6PLM3_CIOIN	LOC100183393	ENSCINP00000009891	ENSCINP00000006863	Bromo domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.422
F6PLM3_CIOIN	LOC100183843	ENSCINP00000009891	ENSCINP00000011952	Bromo domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.412
F6PLM3_CIOIN	LOC100184966	ENSCINP00000009891	ENSCINP00000002195	Bromo domain-containing protein.	Histone H2B-like; Belongs to the histone H2B family.	0.409
F6PLM3_CIOIN	swi/snf	ENSCINP00000009891	ENSCINP00000008495	Bromo domain-containing protein.	Ci-SWI/SNF protein.	0.827
F6QYE3_CIOIN	F6PLM3_CIOIN	ENSCINP00000018059	ENSCINP00000009891	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Bromo domain-containing protein.	0.599
F6QYE3_CIOIN	F6UFC1_CIOIN	ENSCINP00000018059	ENSCINP00000005215	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.554
F6QYE3_CIOIN	F6VCN7_CIOIN	ENSCINP00000018059	ENSCINP00000003167	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	N-acetyltransferase domain-containing protein.	0.401
F6QYE3_CIOIN	F6Z4B6_CIOIN	ENSCINP00000018059	ENSCINP00000006999	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.599
F6QYE3_CIOIN	H2XJF1_CIOIN	ENSCINP00000018059	ENSCINP00000005223	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	SF3b1 domain-containing protein.	0.554