STRINGSTRING
LOC100183293 LOC100183293 LOC100181341 LOC100181341 LOC100178802 LOC100178802 spt4 spt4 H2XJG6_CIOIN H2XJG6_CIOIN F6YZE6_CIOIN F6YZE6_CIOIN F7BHW5_CIOIN F7BHW5_CIOIN F6XB76_CIOIN F6XB76_CIOIN LOC100177815 LOC100177815 LOC100177176 LOC100177176 F7ATY3_CIOIN F7ATY3_CIOIN F6Z277_CIOIN F6Z277_CIOIN F6X941_CIOIN F6X941_CIOIN LOC100182087 LOC100182087 H2XQ36_CIOIN H2XQ36_CIOIN H2XQB7_CIOIN H2XQB7_CIOIN LOC101242260 LOC101242260 H2XTY0_CIOIN H2XTY0_CIOIN H2XU12_CIOIN H2XU12_CIOIN H2XUU5_CIOIN H2XUU5_CIOIN H2XVJ2_CIOIN H2XVJ2_CIOIN LOC100184165 LOC100184165 H2XW76_CIOIN H2XW76_CIOIN H2XZ54_CIOIN H2XZ54_CIOIN H2Y0S6_CIOIN H2Y0S6_CIOIN H2Y233_CIOIN H2Y233_CIOIN H2Y332_CIOIN H2Y332_CIOIN F6XIG6_CIOIN F6XIG6_CIOIN LOC100178283 LOC100178283 F6Y5Q3_CIOIN F6Y5Q3_CIOIN LOC100182343 LOC100182343 F6U8F8_CIOIN F6U8F8_CIOIN LOC100175816 LOC100175816 F6PKJ4_CIOIN F6PKJ4_CIOIN F6PKT6_CIOIN F6PKT6_CIOIN LOC100181821 LOC100181821 LOC100178079 LOC100178079 LOC494392 LOC494392 zf(ring)-55 zf(ring)-55 LOC100177272 LOC100177272 H2XNY4_CIOIN H2XNY4_CIOIN F6SJ61_CIOIN F6SJ61_CIOIN F6SJH8_CIOIN F6SJH8_CIOIN F6S7T3_CIOIN F6S7T3_CIOIN F6S7U3_CIOIN F6S7U3_CIOIN F6SAD5_CIOIN F6SAD5_CIOIN F6QR00_CIOIN F6QR00_CIOIN F6PX81_CIOIN F6PX81_CIOIN LOC100179943 LOC100179943 F6VS86_CIOIN F6VS86_CIOIN LOC100178614 LOC100178614 LOC100182171 LOC100182171 F7AWC6_CIOIN F7AWC6_CIOIN F7AWN2_CIOIN F7AWN2_CIOIN LOC100177816 LOC100177816 F6SKY6_CIOIN F6SKY6_CIOIN LOC100177778 LOC100177778 F6RMT1_CIOIN F6RMT1_CIOIN LOC100182348 LOC100182348 LOC100186426 LOC100186426 F6YGZ1_CIOIN F6YGZ1_CIOIN LOC100187539 LOC100187539 F6Y8T6_CIOIN F6Y8T6_CIOIN LOC100183139 LOC100183139 LOC100183594 LOC100183594 F6UE50_CIOIN F6UE50_CIOIN LOC100177214 LOC100177214 LOC100181502 LOC100181502 F7A363_CIOIN F7A363_CIOIN F6SJW4_CIOIN F6SJW4_CIOIN LOC100179515 LOC100179515 F6X618_CIOIN F6X618_CIOIN LOC100183995 LOC100183995 Zf(c2h2)-114 Zf(c2h2)-114 LOC100175005 LOC100175005 SSRP1 SSRP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100183293Transcription elongation factor A protein 1. (298 aa)
LOC100181341DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
LOC100178802Transcription elongation factor SPT5. (1047 aa)
spt4Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (122 aa)
H2XJG6_CIOINUncharacterized protein. (211 aa)
F6YZE6_CIOINUncharacterized protein. (166 aa)
F7BHW5_CIOINTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
F6XB76_CIOINSPT6_acidic domain-containing protein. (206 aa)
LOC100177815elongin-C-like; Belongs to the SKP1 family. (114 aa)
LOC100177176Uncharacterized protein. (181 aa)
F7ATY3_CIOINUncharacterized protein. (121 aa)
F6Z277_CIOINUncharacterized protein. (210 aa)
F6X941_CIOINUncharacterized protein. (296 aa)
LOC100182087WD repeat-containing protein 61-like. (305 aa)
H2XQ36_CIOINUncharacterized protein. (312 aa)
H2XQB7_CIOINPHD-type domain-containing protein. (164 aa)
LOC101242260DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
H2XTY0_CIOINUncharacterized protein. (204 aa)
H2XU12_CIOINUncharacterized protein. (189 aa)
H2XUU5_CIOINUncharacterized protein. (532 aa)
H2XVJ2_CIOINUncharacterized protein. (141 aa)
LOC100184165General transcription factor IIH subunit 3-like. (309 aa)
H2XW76_CIOINTAF domain-containing protein. (526 aa)
H2XZ54_CIOINRPOLD domain-containing protein. (286 aa)
H2Y0S6_CIOINUncharacterized protein. (1003 aa)
H2Y233_CIOINNuclear cap-binding protein subunit 2. (185 aa)
H2Y332_CIOINDUF3591 domain-containing protein. (202 aa)
F6XIG6_CIOINRPOL4c domain-containing protein. (133 aa)
LOC100178283DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
F6Y5Q3_CIOINRPOLD domain-containing protein. (151 aa)
LOC100182343Transcription initiation factor IIB-like. (314 aa)
F6U8F8_CIOINTAFH domain-containing protein. (598 aa)
LOC100175816TPR_REGION domain-containing protein. (1034 aa)
F6PKJ4_CIOINMIF4G domain-containing protein. (795 aa)
F6PKT6_CIOINRNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (822 aa)
LOC100181821Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (376 aa)
LOC100178079Sperm-associated antigen 16 protein. (606 aa)
LOC494392Uncharacterized protein LOC494392. (131 aa)
zf(ring)-55Zinc finger protein. (323 aa)
LOC100177272DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
H2XNY4_CIOINEAF domain-containing protein. (241 aa)
F6SJ61_CIOINHTH_44 domain-containing protein. (505 aa)
F6SJH8_CIOINS1 motif domain-containing protein. (450 aa)
F6S7T3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
F6S7U3_CIOINGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
F6SAD5_CIOINUncharacterized protein; Belongs to the cyclin family. (514 aa)
F6QR00_CIOINDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
F6PX81_CIOINPlus3 domain-containing protein. (336 aa)
LOC100179943General transcription factor IIF subunit 2. (257 aa)
F6VS86_CIOINAHD domain-containing protein. (660 aa)
LOC100178614AF4/FMR2 family member 4 isoform X3. (1084 aa)
LOC100182171Negative elongation factor E-like. (308 aa)
F7AWC6_CIOINWD_REPEATS_REGION domain-containing protein. (272 aa)
F7AWN2_CIOINLisH domain-containing protein. (321 aa)
LOC100177816cyclin-H; Belongs to the cyclin family. (329 aa)
F6SKY6_CIOINHDAg domain-containing protein. (537 aa)
LOC100177778DNA-directed RNA polymerase II subunit RPB7. (172 aa)
F6RMT1_CIOINUncharacterized protein. (551 aa)
LOC100182348elongin-A3 member D isoform X2. (622 aa)
LOC100186426Negative elongation factor B. (605 aa)
F6YGZ1_CIOINUncharacterized protein. (587 aa)
LOC100187539TFIIS N-terminal domain-containing protein. (658 aa)
F6Y8T6_CIOINTAFII55_N domain-containing protein. (166 aa)
LOC100183139Uncharacterized protein. (1035 aa)
LOC100183594General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
F6UE50_CIOINBTP domain-containing protein. (671 aa)
LOC100177214Uncharacterized protein. (316 aa)
LOC100181502TFIID_20kDa domain-containing protein. (187 aa)
F7A363_CIOINTBP-binding domain-containing protein. (480 aa)
F6SJW4_CIOINUncharacterized protein. (613 aa)
LOC100179515TFIIA-alpha and beta-like factor isoform X1. (332 aa)
F6X618_CIOINTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
LOC100183995Uncharacterized protein. (575 aa)
Zf(c2h2)-114General transcription factor IIH subunit. (395 aa)
LOC100175005HTH TFE/IIEalpha-type domain-containing protein. (343 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (603 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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