49 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183293	Transcription elongation factor A protein 1. (298 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	ENSCINP00000033882	annotation not available (91 aa)
	LOC100184165	General transcription factor IIH subunit 3-like. (309 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	LOC113474176	kxDL motif-containing protein 1-like. (139 aa)
	LOC100182516	RING-box protein 1. (104 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	LOC100182035	COP9 signalosome complex subunit 8-like. (190 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	LOC100176942	COP9 signalosome complex subunit 1. (475 aa)
	ckn1	Cockayne syndrome 1 homolog. (403 aa)
	LOC100177051	PCI domain-containing protein. (442 aa)
	zf(ring)-55	Zinc finger protein. (323 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	F7ANR5_CIOIN	CPSF_A domain-containing protein. (1145 aa)
	F6RZ45_CIOIN	Uncharacterized protein. (591 aa)
	F6S7T3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
	F6S7U3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
	F6SBF1_CIOIN	Uncharacterized protein. (852 aa)
	LOC100177099	Protein NRDE2 homolog. (935 aa)
	F6QLM7_CIOIN	MPN domain-containing protein. (345 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	F6RKQ2_CIOIN	Uncharacterized protein. (437 aa)
	r27a	R27a protein isoform X1. (155 aa)
	F6Y1W8_CIOIN	Uncharacterized protein. (261 aa)
	LOC100177816	cyclin-H; Belongs to the cyclin family. (329 aa)
	LOC113474404	COP9 signalosome complex subunit 7a-like. (283 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	F6RMT1_CIOIN	Uncharacterized protein. (551 aa)
	F6YGJ7_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1099 aa)
	F6ZP18_CIOIN	Uncharacterized protein. (1328 aa)
	LOC113474384	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (245 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	LOC100183592	COP9 signalosome complex subunit 4. (409 aa)
	LOC100179498	DNA repair protein complementing XP-A cells homolog. (279 aa)
	LOC100175879	CULLIN_2 domain-containing protein; Belongs to the cullin family. (614 aa)
	Zf(c2h2)-114	General transcription factor IIH subunit. (395 aa)
	F6Q4Z2_CIOIN	Uncharacterized protein. (276 aa)
	F6Q587_CIOIN	Uncharacterized protein. (86 aa)
	F6RRF2_CIOIN	MPN domain-containing protein. (318 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000033882	F6QLM7_CIOIN	ENSCINP00000033882	ENSCINP00000013258	annotation not available	MPN domain-containing protein.	0.978
ENSCINP00000033882	F6QR00_CIOIN	ENSCINP00000033882	ENSCINP00000013245	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.584
ENSCINP00000033882	F6RMT1_CIOIN	ENSCINP00000033882	ENSCINP00000009626	annotation not available	Uncharacterized protein.	0.538
ENSCINP00000033882	F6RRF2_CIOIN	ENSCINP00000033882	ENSCINP00000001153	annotation not available	MPN domain-containing protein.	0.972
ENSCINP00000033882	F6VJQ1_CIOIN	ENSCINP00000033882	ENSCINP00000026820	annotation not available	Uncharacterized protein.	0.459
ENSCINP00000033882	F6Y1W8_CIOIN	ENSCINP00000033882	ENSCINP00000011714	annotation not available	Uncharacterized protein.	0.835
ENSCINP00000033882	F6ZJN8_CIOIN	ENSCINP00000033882	ENSCINP00000015598	annotation not available	Uncharacterized protein.	0.477
ENSCINP00000033882	F7ANR5_CIOIN	ENSCINP00000033882	ENSCINP00000015292	annotation not available	CPSF_A domain-containing protein.	0.691
ENSCINP00000033882	H2XJG6_CIOIN	ENSCINP00000033882	ENSCINP00000029798	annotation not available	Uncharacterized protein.	0.540
ENSCINP00000033882	LOC100175879	ENSCINP00000033882	ENSCINP00000002393	annotation not available	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.778
ENSCINP00000033882	LOC100176942	ENSCINP00000033882	ENSCINP00000019290	annotation not available	COP9 signalosome complex subunit 1.	0.974
ENSCINP00000033882	LOC100177051	ENSCINP00000033882	ENSCINP00000017753	annotation not available	PCI domain-containing protein.	0.543
ENSCINP00000033882	LOC100177272	ENSCINP00000033882	ENSCINP00000016166	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.500
ENSCINP00000033882	LOC100177816	ENSCINP00000033882	ENSCINP00000010895	annotation not available	cyclin-H; Belongs to the cyclin family.	0.515
ENSCINP00000033882	LOC100181341	ENSCINP00000033882	ENSCINP00000030207	annotation not available	DNA-directed RNA polymerase II subunit RPB11-a isoform X1.	0.564
ENSCINP00000033882	LOC100182035	ENSCINP00000033882	ENSCINP00000022037	annotation not available	COP9 signalosome complex subunit 8-like.	0.976
ENSCINP00000033882	LOC100182516	ENSCINP00000033882	ENSCINP00000031380	annotation not available	RING-box protein 1.	0.788
ENSCINP00000033882	LOC100183592	ENSCINP00000033882	ENSCINP00000005832	annotation not available	COP9 signalosome complex subunit 4.	0.975
ENSCINP00000033882	LOC100183594	ENSCINP00000033882	ENSCINP00000005835	annotation not available	General transcription and DNA repair factor IIH helicase subunit XPB.	0.545
ENSCINP00000033882	LOC101242260	ENSCINP00000033882	ENSCINP00000032951	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.563