STRINGSTRING
LOC100180728 LOC100180728 LOC100185508 LOC100185508 LOC100183259 LOC100183259 F6YWB6_CIOIN F6YWB6_CIOIN LOC100175959 LOC100175959 LOC100186361 LOC100186361 F6R0P0_CIOIN F6R0P0_CIOIN F7AG76_CIOIN F7AG76_CIOIN F6YBA5_CIOIN F6YBA5_CIOIN F6S8X6_CIOIN F6S8X6_CIOIN LOC100182572 LOC100182572 LOC100181712 LOC100181712 LOC100177158 LOC100177158 LOC100175516 LOC100175516 LOC100186483 LOC100186483 F6YMZ5_CIOIN F6YMZ5_CIOIN F6RA65_CIOIN F6RA65_CIOIN F6R4R6_CIOIN F6R4R6_CIOIN LOC100186730 LOC100186730 LOC100184047 LOC100184047 LOC100183019 LOC100183019 F6UDJ0_CIOIN F6UDJ0_CIOIN LOC100178939 LOC100178939 LOC100185465 LOC100185465 F6SDI7_CIOIN F6SDI7_CIOIN F6QDE3_CIOIN F6QDE3_CIOIN LOC100182540 LOC100182540 F6W1S6_CIOIN F6W1S6_CIOIN LOC100177507 LOC100177507 F6ZN98_CIOIN F6ZN98_CIOIN F6ZN43_CIOIN F6ZN43_CIOIN F6U6H9_CIOIN F6U6H9_CIOIN cirgg1 cirgg1 F7A4T6_CIOIN F7A4T6_CIOIN LOC100180640 LOC100180640 LOC100175749 LOC100175749 F6WJQ0_CIOIN F6WJQ0_CIOIN F7B587_CIOIN F7B587_CIOIN LOC100177492 LOC100177492 LOC100183089 LOC100183089 LOC100178269 LOC100178269 F6XBT4_CIOIN F6XBT4_CIOIN LOC100176602 LOC100176602 LOC100184256 LOC100184256 F6PLR6_CIOIN F6PLR6_CIOIN LOC100176033 LOC100176033 LOC100186181 LOC100186181 LOC100187346 LOC100187346 F6ZL99_CIOIN F6ZL99_CIOIN LOC100177375 LOC100177375 LOC100183873 LOC100183873 F7BQ53_CIOIN F7BQ53_CIOIN F6U609_CIOIN F6U609_CIOIN ENSCINP00000011586 ENSCINP00000011586 F6TFE2_CIOIN F6TFE2_CIOIN LOC100182402 LOC100182402 LOC100186454 LOC100186454 F6PZG6_CIOIN F6PZG6_CIOIN LOC100187034 LOC100187034 F6YXI8_CIOIN F6YXI8_CIOIN F6YWW0_CIOIN F6YWW0_CIOIN LOC100183724 LOC100183724 LOC100182700 LOC100182700 rs23 rs23 F6Q4K7_CIOIN F6Q4K7_CIOIN LOC100180799 LOC100180799 LOC100177118 LOC100177118 LOC100180054 LOC100180054 LOC101242128 LOC101242128 F6S765_CIOIN F6S765_CIOIN F7A373_CIOIN F7A373_CIOIN F6ZKI9_CIOIN F6ZKI9_CIOIN F6ZIU2_CIOIN F6ZIU2_CIOIN F6TGX7_CIOIN F6TGX7_CIOIN F6SSM8_CIOIN F6SSM8_CIOIN F6S4U2_CIOIN F6S4U2_CIOIN LOC100179536 LOC100179536 LOC100186763 LOC100186763 LOC100182618 LOC100182618 LOC100181888 LOC100181888 LOC100183682 LOC100183682 F6W132_CIOIN F6W132_CIOIN LOC100177652 LOC100177652 LOC100186345 LOC100186345 F6WWW4_CIOIN F6WWW4_CIOIN F6TKH9_CIOIN F6TKH9_CIOIN LOC100180019 LOC100180019 F6XG84_CIOIN F6XG84_CIOIN LOC100184403 LOC100184403 LOC100176328-2 LOC100176328-2 LOC100176316 LOC100176316 F6SD13_CIOIN F6SD13_CIOIN F6ZDT1_CIOIN F6ZDT1_CIOIN LOC100179576 LOC100179576 LOC100180716 LOC100180716 LOC100184404 LOC100184404 LOC108951018 LOC108951018 LOC100180455 LOC100180455 F6TAD8_CIOIN F6TAD8_CIOIN LOC100180699 LOC100180699 F6XVJ4_CIOIN F6XVJ4_CIOIN F6TEX2_CIOIN F6TEX2_CIOIN LOC100185367 LOC100185367 LOC100184231 LOC100184231 F6RBK2_CIOIN F6RBK2_CIOIN LOC100179092 LOC100179092 LOC100177458 LOC100177458 F6YF30_CIOIN F6YF30_CIOIN LOC100183007 LOC100183007 F6V2B2_CIOIN F6V2B2_CIOIN LOC100187445 LOC100187445 LOC100175793 LOC100175793 Wbscr27-like Wbscr27-like LOC100185027 LOC100185027 F6TCX3_CIOIN F6TCX3_CIOIN LOC100180220 LOC100180220 F6UYV3_CIOIN F6UYV3_CIOIN F6Y6X7_CIOIN F6Y6X7_CIOIN LOC100182394 LOC100182394 LOC100175264 LOC100175264 F6T6V3_CIOIN F6T6V3_CIOIN LOC100184303 LOC100184303 LOC100186399 LOC100186399 rl32 rl32 F6ZRR5_CIOIN F6ZRR5_CIOIN LOC100183305 LOC100183305 F6Y252_CIOIN F6Y252_CIOIN LOC100175357 LOC100175357 LOC100186249 LOC100186249 LOC108949278 LOC108949278 F6WZ37_CIOIN F6WZ37_CIOIN H2XJM9_CIOIN H2XJM9_CIOIN LOC100177882 LOC100177882 H2XKD8_CIOIN H2XKD8_CIOIN LOC100176401 LOC100176401 LOC100175738 LOC100175738 LOC100187471 LOC100187471 LOC100178413 LOC100178413 LOC100179273 LOC100179273 LOC100178383 LOC100178383 LOC113474176 LOC113474176 H2XQ81_CIOIN H2XQ81_CIOIN LOC100180269 LOC100180269 H2XSM0_CIOIN H2XSM0_CIOIN H2XSQ8_CIOIN H2XSQ8_CIOIN H2XT24_CIOIN H2XT24_CIOIN LOC101242218 LOC101242218 H2XTN0_CIOIN H2XTN0_CIOIN rps13 rps13 H2XU65_CIOIN H2XU65_CIOIN H2XU97_CIOIN H2XU97_CIOIN H2XUI3_CIOIN H2XUI3_CIOIN H2XUU0_CIOIN H2XUU0_CIOIN LOC100184857 LOC100184857 H2XWE4_CIOIN H2XWE4_CIOIN r35a r35a H2XWG7_CIOIN H2XWG7_CIOIN LOC113474038 LOC113474038 H2XWZ3_CIOIN H2XWZ3_CIOIN LOC100178209 LOC100178209 H2XY32_CIOIN H2XY32_CIOIN H2XY59_CIOIN H2XY59_CIOIN H2XYT6_CIOIN H2XYT6_CIOIN LOC100182886 LOC100182886 H2Y058_CIOIN H2Y058_CIOIN LOC100175325 LOC100175325 LOC100184042 LOC100184042 H2Y1B5_CIOIN H2Y1B5_CIOIN H2Y1Y8_CIOIN H2Y1Y8_CIOIN LOC100181824 LOC100181824 LOC100182620 LOC100182620
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100180728WD_REPEATS_REGION domain-containing protein. (453 aa)
LOC100185508WD repeat-containing protein 43. (630 aa)
LOC100183259Uncharacterized protein. (721 aa)
F6YWB6_CIOINNucleolar protein 6. (831 aa)
LOC10017595960S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
LOC10018636160S ribosomal protein L6. (246 aa)
F6R0P0_CIOINRibosomal_S10 domain-containing protein. (128 aa)
F7AG76_CIOINUncharacterized protein. (253 aa)
F6YBA5_CIOINUncharacterized protein. (1170 aa)
F6S8X6_CIOINUncharacterized protein. (143 aa)
LOC100182572Bystin-like. (436 aa)
LOC10018171240S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
LOC10017715840S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
LOC100175516Uncharacterized protein. (603 aa)
LOC100186483Probable ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (449 aa)
F6YMZ5_CIOINUncharacterized protein. (68 aa)
F6RA65_CIOINRIO domain-containing protein. (504 aa)
F6R4R6_CIOINHRDC domain-containing protein. (292 aa)
LOC10018673040S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
LOC10018404760S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (220 aa)
LOC100183019Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (154 aa)
F6UDJ0_CIOINUncharacterized protein. (1742 aa)
LOC100178939U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
LOC100185465U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
F6SDI7_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (435 aa)
F6QDE3_CIOINBms1-type G domain-containing protein. (1061 aa)
LOC100182540Uncharacterized protein. (1030 aa)
F6W1S6_CIOINUncharacterized protein. (403 aa)
LOC10017750760S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
F6ZN98_CIOINDRIM domain-containing protein. (2648 aa)
F6ZN43_CIOINWD_REPEATS_REGION domain-containing protein. (351 aa)
F6U6H9_CIOINMethyltransf_11 domain-containing protein. (199 aa)
cirgg1Uncharacterized protein. (436 aa)
F7A4T6_CIOINRNB domain-containing protein. (741 aa)
LOC10018064060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
LOC10017574960S ribosomal protein L26. (145 aa)
F6WJQ0_CIOINRibosomal_L16 domain-containing protein. (202 aa)
F7B587_CIOINUncharacterized protein. (108 aa)
LOC100177492U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
LOC100183089Exosome complex component RRP43. (279 aa)
LOC100178269Exonuclease domain-containing protein. (196 aa)
F6XBT4_CIOINRibosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (206 aa)
LOC100176602Methyltransferase-like protein 27. (224 aa)
LOC100184256Exosome complex component RRP42-like. (290 aa)
F6PLR6_CIOINUncharacterized protein. (176 aa)
LOC100176033KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
LOC100186181rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
LOC100187346Uncharacterized protein. (580 aa)
F6ZL99_CIOINUtp12 domain-containing protein. (238 aa)
LOC100177375Uncharacterized protein LOC100177375. (249 aa)
LOC100183873WD_REPEATS_REGION domain-containing protein. (447 aa)
F7BQ53_CIOINWD_REPEATS_REGION domain-containing protein. (501 aa)
F6U609_CIOINNop domain-containing protein. (533 aa)
ENSCINP00000011586Uncharacterized protein. (235 aa)
F6TFE2_CIOINUncharacterized protein. (283 aa)
LOC10018240260S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (178 aa)
LOC100186454Uncharacterized protein. (907 aa)
F6PZG6_CIOINUncharacterized protein. (251 aa)
LOC10018703440S ribosomal protein S24. (132 aa)
F6YXI8_CIOINRibosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (786 aa)
F6YWW0_CIOINMethyltransf_11 domain-containing protein. (239 aa)
LOC100183724Alpha-tectorin-like. (434 aa)
LOC100182700SAP domain-containing protein. (320 aa)
rs2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
F6Q4K7_CIOIN40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (205 aa)
LOC10018079960S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
LOC100177118Uncharacterized protein. (411 aa)
LOC100180054U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
LOC101242128Uncharacterized protein. (246 aa)
F6S765_CIOINNUC202 domain-containing protein. (565 aa)
F7A373_CIOINS4 RNA-binding domain-containing protein. (102 aa)
F6ZKI9_CIOIN40S_S4_C domain-containing protein. (80 aa)
F6ZIU2_CIOINUncharacterized protein. (324 aa)
F6TGX7_CIOINUncharacterized protein. (364 aa)
F6SSM8_CIOINRibos_L4_asso_C domain-containing protein. (281 aa)
F6S4U2_CIOINCP-type G domain-containing protein. (538 aa)
LOC10017953660S ribosomal protein L35. (123 aa)
LOC10018676360S ribosomal protein L5. (296 aa)
LOC100182618Ipi1_N domain-containing protein. (745 aa)
LOC100181888Uncharacterized protein LOC100181888. (234 aa)
LOC100183682Uncharacterized protein. (834 aa)
F6W132_CIOINBP28CT domain-containing protein. (414 aa)
LOC10017765260S ribosomal protein L9. (191 aa)
LOC10018634560S ribosomal protein L7a. (268 aa)
F6WWW4_CIOINWD_REPEATS_REGION domain-containing protein. (786 aa)
F6TKH9_CIOINRNase_PH domain-containing protein. (247 aa)
LOC100180019RNA-binding protein PNO1. (233 aa)
F6XG84_CIOINU3snoRNP10 domain-containing protein. (413 aa)
LOC100184403Uncharacterized protein. (237 aa)
LOC100176328-2Uncharacterized protein LOC100176328 isoform X2. (263 aa)
LOC10017631660S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family. (145 aa)
F6SD13_CIOINUncharacterized protein. (56 aa)
F6ZDT1_CIOINExonuclease domain-containing protein. (256 aa)
LOC100179576CLP1_P domain-containing protein. (557 aa)
LOC10018071660S ribosomal protein L31. (125 aa)
LOC10018440460S ribosomal protein L17-like; Belongs to the universal ribosomal protein uL22 family. (183 aa)
LOC10895101860S ribosomal protein L21-like isoform X3. (160 aa)
LOC10018045540S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
F6TAD8_CIOINCBF domain-containing protein. (511 aa)
LOC10018069960S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (98 aa)
F6XVJ4_CIOINUncharacterized protein. (733 aa)
F6TEX2_CIOINUncharacterized protein. (74 aa)
LOC10018536760S ribosomal protein L8. (256 aa)
LOC10018423160S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
F6RBK2_CIOINRibosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (427 aa)
LOC10017909260S ribosomal protein L18. (188 aa)
LOC10017745860S ribosomal protein L37a. (90 aa)
F6YF30_CIOINUncharacterized protein. (88 aa)
LOC100183007Probable rRNA-processing protein EBP2 isoform X1. (177 aa)
F6V2B2_CIOINRNase_PH domain-containing protein. (280 aa)
LOC100187445Probable ATP-dependent RNA helicase DDX49 isoform X1; Belongs to the DEAD box helicase family. (457 aa)
LOC100175793Uncharacterized protein LOC100175793 isoform X3. (234 aa)
Wbscr27-likeMethyltransf_11 domain-containing protein. (238 aa)
LOC100185027Uncharacterized protein LOC100185027. (235 aa)
F6TCX3_CIOINUncharacterized protein. (167 aa)
LOC10018022060S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
F6UYV3_CIOINMethyltransf_11 domain-containing protein. (160 aa)
F6Y6X7_CIOINRibosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (147 aa)
LOC100182394Exosome complex component RRP4. (302 aa)
LOC100175264Uncharacterized protein LOC100175264. (221 aa)
F6T6V3_CIOINNucleolar protein 6. (234 aa)
LOC100184303Uncharacterized protein. (463 aa)
LOC10018639960S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
rl32Uncharacterized protein. (136 aa)
F6ZRR5_CIOINUncharacterized protein. (475 aa)
LOC10018330560S ribosomal protein L30. (118 aa)
F6Y252_CIOINGN3L_Grn1 domain-containing protein. (71 aa)
LOC100175357Uromodulin. (445 aa)
LOC10018624940S ribosomal protein S19. (148 aa)
LOC10894927860S ribosomal protein L22-like isoform X1. (131 aa)
F6WZ37_CIOINUncharacterized protein. (51 aa)
H2XJM9_CIOINUncharacterized protein. (96 aa)
LOC100177882Ribonuclease P protein subunit p30-like. (270 aa)
H2XKD8_CIOIN60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (58 aa)
LOC100176401Methyltransf_25 domain-containing protein. (236 aa)
LOC100175738Uncharacterized protein. (134 aa)
LOC100187471Uncharacterized protein; Belongs to the RNR ribonuclease family. (916 aa)
LOC100178413KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
LOC100179273Sas10 domain-containing protein. (465 aa)
LOC100178383RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (397 aa)
LOC113474176kxDL motif-containing protein 1-like. (139 aa)
H2XQ81_CIOINPINc domain-containing protein. (201 aa)
LOC100180269Uncharacterized protein. (866 aa)
H2XSM0_CIOIN5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (832 aa)
H2XSQ8_CIOINUncharacterized protein. (152 aa)
H2XT24_CIOINUncharacterized protein. (376 aa)
LOC101242218Uncharacterized protein LOC101242218 isoform X1. (233 aa)
H2XTN0_CIOINUncharacterized protein. (370 aa)
rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
H2XU65_CIOINKH_dom_type_1 domain-containing protein. (241 aa)
H2XU97_CIOINHRDC domain-containing protein. (194 aa)
H2XUI3_CIOINUncharacterized protein. (208 aa)
H2XUU0_CIOINMethyltranfer_dom domain-containing protein. (210 aa)
LOC10018485740S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
H2XWE4_CIOINS5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
r35aUncharacterized protein. (121 aa)
H2XWG7_CIOINU3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (233 aa)
LOC113474038Methyltransferase-like protein 27. (242 aa)
H2XWZ3_CIOINPutative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (736 aa)
LOC100178209Nop domain-containing protein. (561 aa)
H2XY32_CIOINHelicase C-terminal domain-containing protein. (181 aa)
H2XY59_CIOINMethyltransf_11 domain-containing protein. (235 aa)
H2XYT6_CIOIN3'-5' exonuclease domain-containing protein. (261 aa)
LOC100182886Ribonuclease P protein subunit p21. (132 aa)
H2Y058_CIOINUncharacterized protein. (191 aa)
LOC100175325Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (207 aa)
LOC100184042Uncharacterized protein. (611 aa)
H2Y1B5_CIOINUncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (68 aa)
H2Y1Y8_CIOINUncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
LOC100181824Bms1-type G domain-containing protein. (784 aa)
LOC100182620Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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