STRINGSTRING
r27a r27a F6QH43_CIOIN F6QH43_CIOIN F6U8F8_CIOIN F6U8F8_CIOIN ck2a ck2a F6Q9T0_CIOIN F6Q9T0_CIOIN LOC100175606 LOC100175606 F6WC79_CIOIN F6WC79_CIOIN F7A0P0_CIOIN F7A0P0_CIOIN Zf(cchc/grf)-1 Zf(cchc/grf)-1 SSRP1 SSRP1 F6RJ65_CIOIN F6RJ65_CIOIN F6RZ99_CIOIN F6RZ99_CIOIN F6RYY5_CIOIN F6RYY5_CIOIN F6T6X1_CIOIN F6T6X1_CIOIN F6SJW4_CIOIN F6SJW4_CIOIN F7A363_CIOIN F7A363_CIOIN LOC100181502 LOC100181502 LOC100179894 LOC100179894 F6W2K0_CIOIN F6W2K0_CIOIN F6QHZ5_CIOIN F6QHZ5_CIOIN LOC100177214 LOC100177214 F6UE50_CIOIN F6UE50_CIOIN F6XMX2_CIOIN F6XMX2_CIOIN LOC100184788 LOC100184788 LOC100183139 LOC100183139 F6Y8T6_CIOIN F6Y8T6_CIOIN ck2b ck2b LOC100176859 LOC100176859 F6VXQ6_CIOIN F6VXQ6_CIOIN F6YGZ1_CIOIN F6YGZ1_CIOIN F6TV58_CIOIN F6TV58_CIOIN LOC100187071 LOC100187071 F7ATF3_CIOIN F7ATF3_CIOIN LOC100175771 LOC100175771 LOC100181422 LOC100181422 LOC100184659 LOC100184659 F6WMB2_CIOIN F6WMB2_CIOIN LOC100185652 LOC100185652 LOC100185384 LOC100185384 LOC100179869 LOC100179869 F7AWN2_CIOIN F7AWN2_CIOIN F7AWC6_CIOIN F7AWC6_CIOIN F6YQR4_CIOIN F6YQR4_CIOIN F6USX3_CIOIN F6USX3_CIOIN LOC100181635 LOC100181635 F6WQ08_CIOIN F6WQ08_CIOIN F6Z277_CIOIN F6Z277_CIOIN F6Q2W2_CIOIN F6Q2W2_CIOIN LOC100177176 LOC100177176 F6SBN1_CIOIN F6SBN1_CIOIN F6VJQ1_CIOIN F6VJQ1_CIOIN F6YN96_CIOIN F6YN96_CIOIN H2XJH5_CIOIN H2XJH5_CIOIN LOC113474468 LOC113474468 H2XJL8_CIOIN H2XJL8_CIOIN H2XKE3_CIOIN H2XKE3_CIOIN H2XKT2_CIOIN H2XKT2_CIOIN H2XL15_CIOIN H2XL15_CIOIN H2XL69_CIOIN H2XL69_CIOIN H2XN24_CIOIN H2XN24_CIOIN H2XNP0_CIOIN H2XNP0_CIOIN H2XNU2_CIOIN H2XNU2_CIOIN LOC113474176 LOC113474176 H2XQB7_CIOIN H2XQB7_CIOIN H2XR02_CIOIN H2XR02_CIOIN H2XRC3_CIOIN H2XRC3_CIOIN H2XRL6_CIOIN H2XRL6_CIOIN H2XV49_CIOIN H2XV49_CIOIN H2XW76_CIOIN H2XW76_CIOIN H2XWS4_CIOIN H2XWS4_CIOIN LOC100182514 LOC100182514 LOC100179093 LOC100179093 H2Y0S6_CIOIN H2Y0S6_CIOIN H2Y1I3_CIOIN H2Y1I3_CIOIN H2Y2T2_CIOIN H2Y2T2_CIOIN H2Y332_CIOIN H2Y332_CIOIN F6ZJN8_CIOIN F6ZJN8_CIOIN F6T718_CIOIN F6T718_CIOIN F6Z8G0_CIOIN F6Z8G0_CIOIN F6T453_CIOIN F6T453_CIOIN F7BH38_CIOIN F7BH38_CIOIN LOC100184859 LOC100184859 LOC100181289 LOC100181289 F6RS66_CIOIN F6RS66_CIOIN F6UCD8_CIOIN F6UCD8_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
r27aR27a protein isoform X1. (155 aa)
F6QH43_CIOINRING-type domain-containing protein. (309 aa)
F6U8F8_CIOINTAFH domain-containing protein. (598 aa)
ck2aCasein kinase 2 alpha subunit; Belongs to the protein kinase superfamily. (385 aa)
F6Q9T0_CIOINUncharacterized protein. (231 aa)
LOC100175606Homeodomain-interacting protein kinase 2. (1082 aa)
F6WC79_CIOINUncharacterized protein. (347 aa)
F7A0P0_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (294 aa)
Zf(cchc/grf)-1DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (456 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (603 aa)
F6RJ65_CIOINUncharacterized protein; Belongs to the PI3/PI4-kinase family. (268 aa)
F6RZ99_CIOINZinc-hook domain-containing protein. (477 aa)
F6RYY5_CIOINAAA_23 domain-containing protein. (400 aa)
F6T6X1_CIOINTudor domain-containing protein. (431 aa)
F6SJW4_CIOINUncharacterized protein. (613 aa)
F7A363_CIOINTBP-binding domain-containing protein. (480 aa)
LOC100181502TFIID_20kDa domain-containing protein. (187 aa)
LOC100179894Werner syndrome ATP-dependent helicase homolog isoform X1. (1194 aa)
F6W2K0_CIOINDUF1767 domain-containing protein. (486 aa)
F6QHZ5_CIOINFHA domain-containing protein. (234 aa)
LOC100177214Uncharacterized protein. (316 aa)
F6UE50_CIOINBTP domain-containing protein. (671 aa)
F6XMX2_CIOINUncharacterized protein. (279 aa)
LOC100184788Non-specific serine/threonine protein kinase. (554 aa)
LOC100183139Uncharacterized protein. (1035 aa)
F6Y8T6_CIOINTAFII55_N domain-containing protein. (166 aa)
ck2bCasein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
LOC100176859Uncharacterized protein LOC100176859. (532 aa)
F6VXQ6_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (272 aa)
F6YGZ1_CIOINUncharacterized protein. (587 aa)
F6TV58_CIOINUncharacterized protein. (147 aa)
LOC100187071Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (187 aa)
F7ATF3_CIOINzf-4CXXC_R1 domain-containing protein. (286 aa)
LOC100175771Cell cycle checkpoint control protein; Belongs to the rad9 family. (424 aa)
LOC100181422Replication factor C subunit 2-like. (336 aa)
LOC100184659AMPKBI domain-containing protein. (227 aa)
F6WMB2_CIOINUncharacterized protein. (524 aa)
LOC100185652Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family. (530 aa)
LOC100185384ubiquitin-60S ribosomal protein L40. (128 aa)
LOC100179869Checkpoint protein; Belongs to the HUS1 family. (286 aa)
F7AWN2_CIOINLisH domain-containing protein. (321 aa)
F7AWC6_CIOINWD_REPEATS_REGION domain-containing protein. (272 aa)
F6YQR4_CIOINUncharacterized protein. (754 aa)
F6USX3_CIOINUncharacterized protein. (983 aa)
LOC100181635AAA domain-containing protein. (356 aa)
F6WQ08_CIOINProtein kinase domain-containing protein. (473 aa)
F6Z277_CIOINUncharacterized protein. (210 aa)
F6Q2W2_CIOINANK_REP_REGION domain-containing protein. (223 aa)
LOC100177176Uncharacterized protein. (181 aa)
F6SBN1_CIOINProtein kinase domain-containing protein. (140 aa)
F6VJQ1_CIOINUncharacterized protein. (347 aa)
F6YN96_CIOIN3'-5' exonuclease domain-containing protein. (573 aa)
H2XJH5_CIOINANK_REP_REGION domain-containing protein. (95 aa)
LOC113474468Replication protein A 14 kDa subunit-like. (118 aa)
H2XJL8_CIOINUncharacterized protein. (292 aa)
H2XKE3_CIOINUncharacterized protein. (220 aa)
H2XKT2_CIOIN3'-5' exonuclease domain-containing protein. (128 aa)
H2XL15_CIOINSAE2 domain-containing protein. (153 aa)
H2XL69_CIOINUncharacterized protein. (458 aa)
H2XN24_CIOINPI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family. (158 aa)
H2XNP0_CIOINUncharacterized protein. (243 aa)
H2XNU2_CIOINUncharacterized protein. (214 aa)
LOC113474176kxDL motif-containing protein 1-like. (139 aa)
H2XQB7_CIOINPHD-type domain-containing protein. (164 aa)
H2XR02_CIOINDUF1767 domain-containing protein. (229 aa)
H2XRC3_CIOINUncharacterized protein. (224 aa)
H2XRL6_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (209 aa)
H2XV49_CIOINFAT domain-containing protein. (219 aa)
H2XW76_CIOINTAF domain-containing protein. (526 aa)
H2XWS4_CIOINUncharacterized protein. (179 aa)
LOC100182514Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
LOC100179093AAA domain-containing protein. (329 aa)
H2Y0S6_CIOINUncharacterized protein. (1003 aa)
H2Y1I3_CIOINUncharacterized protein. (231 aa)
H2Y2T2_CIOINFAT domain-containing protein. (235 aa)
H2Y332_CIOINDUF3591 domain-containing protein. (202 aa)
F6ZJN8_CIOINUncharacterized protein. (381 aa)
F6T718_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (440 aa)
F6Z8G0_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (454 aa)
F6T453_CIOINUncharacterized protein; Belongs to the cyclin family. (430 aa)
F7BH38_CIOINUncharacterized protein. (326 aa)
LOC100184859Replication factor C subunit 3-like. (355 aa)
LOC100181289Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
F6RS66_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (462 aa)
F6UCD8_CIOINUncharacterized protein. (681 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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