73 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XKX7_CIOIN	CID domain-containing protein. (235 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	LOC100178802	Transcription elongation factor SPT5. (1047 aa)
	spt4	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (122 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6Z867_CIOIN	Uncharacterized protein. (346 aa)
	F6YS50_CIOIN	Uncharacterized protein. (311 aa)
	F7BHW5_CIOIN	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
	F7ATY3_CIOIN	Uncharacterized protein. (121 aa)
	F6Z277_CIOIN	Uncharacterized protein. (210 aa)
	F7A705_CIOIN	TPR_REGION domain-containing protein. (294 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F6ZUX6_CIOIN	Uncharacterized protein. (194 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6QY65_CIOIN	Uncharacterized protein. (216 aa)
	F6PIV0_CIOIN	TPR_REGION domain-containing protein. (290 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	LOC100182343	Transcription initiation factor IIB-like. (314 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	LOC100181821	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (376 aa)
	LOC100187315	Uncharacterized protein. (1073 aa)
	LOC100178079	Sperm-associated antigen 16 protein. (606 aa)
	F6X0H8_CIOIN	Lactamase_B domain-containing protein. (281 aa)
	F6QZ12_CIOIN	Uncharacterized protein. (615 aa)
	F6UQJ9_CIOIN	VWFA domain-containing protein. (659 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	F6YIU9_CIOIN	VWFA domain-containing protein. (486 aa)
	F6YK36_CIOIN	Uncharacterized protein. (563 aa)
	F6YK49_CIOIN	Uncharacterized protein. (175 aa)
	F6YK62_CIOIN	CID domain-containing protein. (222 aa)
	F6SAD5_CIOIN	Uncharacterized protein; Belongs to the cyclin family. (514 aa)
	F6XAQ8_CIOIN	TPR_REGION domain-containing protein. (833 aa)
	Pou-like	Uncharacterized protein. (604 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	F6RSZ1_CIOIN	Uncharacterized protein. (713 aa)
	F7AWC6_CIOIN	WD_REPEATS_REGION domain-containing protein. (272 aa)
	F7AWN2_CIOIN	LisH domain-containing protein. (321 aa)
	F6YI50_CIOIN	Uncharacterized protein. (251 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	LOC100187321	RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (192 aa)
	F7BN02_CIOIN	INTS5_C domain-containing protein. (663 aa)
	F6YGZ1_CIOIN	Uncharacterized protein. (587 aa)
	F7BHR3_CIOIN	Uncharacterized protein. (857 aa)
	zf(c2h2)-55	Zinc finger protein 55. (858 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	LOC100185111	BTP domain-containing protein. (231 aa)
	LOC100176679	Uncharacterized protein. (914 aa)
	LOC100186018	Integrator complex subunit 11-like. (605 aa)
	LOC100179515	TFIIA-alpha and beta-like factor isoform X1. (332 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	F6XWB1_CIOIN	Uncharacterized protein. (137 aa)
	F6ZTV7_CIOIN	CCDC66 domain-containing protein. (714 aa)
	H2XZK3_CIOIN	INTS5_N domain-containing protein. (248 aa)
	LOC100179349	Integrator complex subunit 8-like. (231 aa)
	LOC100175005	HTH TFE/IIEalpha-type domain-containing protein. (343 aa)
	F6T377_CIOIN	Uncharacterized protein. (415 aa)
	ci-zf(c3h)-7	Uncharacterized protein. (977 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2XXT7_CIOIN	PHD-type domain-containing protein. (435 aa)
	H2XWH5_CIOIN	Uncharacterized protein. (140 aa)
	H2XW76_CIOIN	TAF domain-containing protein. (526 aa)
	H2XVU3_CIOIN	Uncharacterized protein. (328 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XRS0_CIOIN	TPR_REGION domain-containing protein. (201 aa)
	H2XP55_CIOIN	Uncharacterized protein. (682 aa)
	H2XNV6_CIOIN	DUF3677 domain-containing protein. (2201 aa)
	H2XNK1_CIOIN	Uncharacterized protein. (129 aa)
	H2XLM2_CIOIN	Uncharacterized protein. (169 aa)
	H2Y3S7_CIOIN	Uncharacterized protein. (633 aa)
	H2Y233_CIOIN	Nuclear cap-binding protein subunit 2. (185 aa)
	H2Y1C3_CIOIN	Uncharacterized protein. (124 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PIV0_CIOIN	F6QR00_CIOIN	ENSCINP00000020208	ENSCINP00000013245	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.487
F6PIV0_CIOIN	F6QZ12_CIOIN	ENSCINP00000020208	ENSCINP00000016855	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.705
F6PIV0_CIOIN	F6RSZ1_CIOIN	ENSCINP00000020208	ENSCINP00000011904	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.416
F6PIV0_CIOIN	F6UQJ9_CIOIN	ENSCINP00000020208	ENSCINP00000016688	TPR_REGION domain-containing protein.	VWFA domain-containing protein.	0.660
F6PIV0_CIOIN	F6X0H8_CIOIN	ENSCINP00000020208	ENSCINP00000017485	TPR_REGION domain-containing protein.	Lactamase_B domain-containing protein.	0.517
F6PIV0_CIOIN	F6XIG6_CIOIN	ENSCINP00000020208	ENSCINP00000021902	TPR_REGION domain-containing protein.	RPOL4c domain-containing protein.	0.465
F6PIV0_CIOIN	F6XWB1_CIOIN	ENSCINP00000020208	ENSCINP00000003389	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.444
F6PIV0_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000020208	ENSCINP00000019931	TPR_REGION domain-containing protein.	RPOLD domain-containing protein.	0.415
F6PIV0_CIOIN	F6Z867_CIOIN	ENSCINP00000020208	ENSCINP00000028247	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.444
F6PIV0_CIOIN	F6ZUX6_CIOIN	ENSCINP00000020208	ENSCINP00000021872	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.517
F6PIV0_CIOIN	F7BN02_CIOIN	ENSCINP00000020208	ENSCINP00000008964	TPR_REGION domain-containing protein.	INTS5_C domain-containing protein.	0.582
F6PIV0_CIOIN	H2XJG6_CIOIN	ENSCINP00000020208	ENSCINP00000029798	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.498
F6PIV0_CIOIN	H2XLM2_CIOIN	ENSCINP00000020208	ENSCINP00000030554	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.416
F6PIV0_CIOIN	H2XNK1_CIOIN	ENSCINP00000020208	ENSCINP00000031234	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.578
F6PIV0_CIOIN	H2XNV6_CIOIN	ENSCINP00000020208	ENSCINP00000031339	TPR_REGION domain-containing protein.	DUF3677 domain-containing protein.	0.780
F6PIV0_CIOIN	H2XP55_CIOIN	ENSCINP00000020208	ENSCINP00000031438	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.772
F6PIV0_CIOIN	H2XRS0_CIOIN	ENSCINP00000020208	ENSCINP00000032354	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.848
F6PIV0_CIOIN	H2XVJ2_CIOIN	ENSCINP00000020208	ENSCINP00000033676	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.482
F6PIV0_CIOIN	H2XXT7_CIOIN	ENSCINP00000020208	ENSCINP00000034471	TPR_REGION domain-containing protein.	PHD-type domain-containing protein.	0.614
F6PIV0_CIOIN	H2XZ54_CIOIN	ENSCINP00000020208	ENSCINP00000034938	TPR_REGION domain-containing protein.	RPOLD domain-containing protein.	0.415