45 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6SGH3_CIOIN	RRM domain-containing protein. (167 aa)
	LOC100178056	Splicing factor 3B subunit 3 isoform X1. (1216 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	F6TTP5_CIOIN	Uncharacterized protein. (221 aa)
	F6T7R0_CIOIN	Uncharacterized protein; Belongs to the DEAD box helicase family. (450 aa)
	LOC100182908	Uncharacterized protein; Belongs to the DEAD box helicase family. (779 aa)
	F6XU26_CIOIN	Zinc finger protein Ci-ZF(C3H/U1like)-1 isoform X2. (162 aa)
	LOC100177970	Splicing factor 3B subunit 4-like. (375 aa)
	F6UFC1_CIOIN	Uncharacterized protein. (482 aa)
	LOC100178501	Uncharacterized protein. (211 aa)
	H2XJF1_CIOIN	SF3b1 domain-containing protein. (898 aa)
	LOC100185263	CHHC U11-48K-type domain-containing protein. (318 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	LOC100176960	Uncharacterized protein. (2140 aa)
	H2Y233_CIOIN	Nuclear cap-binding protein subunit 2. (185 aa)
	F6Y1N2_CIOIN	PSP domain-containing protein. (626 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100183839	U5 small nuclear ribonucleoprotein 40 kDa protein. (351 aa)
	LOC100176319	Serine/arginine-rich splicing factor 1B isoform X2. (235 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	LOC100176856	Uncharacterized protein. (956 aa)
	F6PKJ4_CIOIN	MIF4G domain-containing protein. (795 aa)
	LOC100175824	116 kDa U5 small nuclear ribonucleoprotein component. (973 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	LOC100181343	RRM domain-containing protein. (127 aa)
	F6YB82_CIOIN	Uncharacterized protein. (251 aa)
	LOC100178781	Small nuclear ribonucleoprotein-associated protein B-like. (167 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	zf(cchc)-24	Serine/arginine-rich splicing factor 7. (230 aa)
	LOC113474017	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like. (143 aa)
	LOC100185829	Uncharacterized protein. (486 aa)
	H2XZL8_CIOIN	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (125 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2XW02_CIOIN	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC100178572	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	LOC100180841	Uncharacterized protein. (472 aa)
	Zf(c3h)-13	Uncharacterized protein. (477 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XKA1_CIOIN	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
	LOC100181938	Uncharacterized protein. (452 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKJ4_CIOIN	F6QR00_CIOIN	ENSCINP00000018247	ENSCINP00000013245	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.724
F6PKJ4_CIOIN	F6SGH3_CIOIN	ENSCINP00000018247	ENSCINP00000000458	MIF4G domain-containing protein.	RRM domain-containing protein.	0.750
F6PKJ4_CIOIN	F6T7R0_CIOIN	ENSCINP00000018247	ENSCINP00000003726	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.438
F6PKJ4_CIOIN	F6TTP5_CIOIN	ENSCINP00000018247	ENSCINP00000003715	MIF4G domain-containing protein.	Uncharacterized protein.	0.438
F6PKJ4_CIOIN	F6UFC1_CIOIN	ENSCINP00000018247	ENSCINP00000005215	MIF4G domain-containing protein.	Uncharacterized protein.	0.653
F6PKJ4_CIOIN	F6X618_CIOIN	ENSCINP00000018247	ENSCINP00000003619	MIF4G domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.666
F6PKJ4_CIOIN	F6XU26_CIOIN	ENSCINP00000018247	ENSCINP00000003931	MIF4G domain-containing protein.	Zinc finger protein Ci-ZF(C3H/U1like)-1 isoform X2.	0.788
F6PKJ4_CIOIN	F6Y1N2_CIOIN	ENSCINP00000018247	ENSCINP00000011728	MIF4G domain-containing protein.	PSP domain-containing protein.	0.813
F6PKJ4_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000018247	ENSCINP00000019931	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	F6YB82_CIOIN	ENSCINP00000018247	ENSCINP00000026132	MIF4G domain-containing protein.	Uncharacterized protein.	0.509
F6PKJ4_CIOIN	H2XJF1_CIOIN	ENSCINP00000018247	ENSCINP00000005223	MIF4G domain-containing protein.	SF3b1 domain-containing protein.	0.654
F6PKJ4_CIOIN	H2XKA1_CIOIN	ENSCINP00000018247	ENSCINP00000030083	MIF4G domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.961
F6PKJ4_CIOIN	H2XW02_CIOIN	ENSCINP00000018247	ENSCINP00000033836	MIF4G domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.967
F6PKJ4_CIOIN	H2XZ54_CIOIN	ENSCINP00000018247	ENSCINP00000034938	MIF4G domain-containing protein.	RPOLD domain-containing protein.	0.592
F6PKJ4_CIOIN	H2XZL8_CIOIN	ENSCINP00000018247	ENSCINP00000035102	MIF4G domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.940
F6PKJ4_CIOIN	H2Y233_CIOIN	ENSCINP00000018247	ENSCINP00000035968	MIF4G domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.999
F6PKJ4_CIOIN	LOC100175824	ENSCINP00000018247	ENSCINP00000019043	MIF4G domain-containing protein.	116 kDa U5 small nuclear ribonucleoprotein component.	0.705
F6PKJ4_CIOIN	LOC100176319	ENSCINP00000018247	ENSCINP00000015147	MIF4G domain-containing protein.	Serine/arginine-rich splicing factor 1B isoform X2.	0.750
F6PKJ4_CIOIN	LOC100176960	ENSCINP00000018247	ENSCINP00000010465	MIF4G domain-containing protein.	Uncharacterized protein.	0.830
F6PKJ4_CIOIN	LOC100177272	ENSCINP00000018247	ENSCINP00000016166	MIF4G domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651