STRINGSTRING
LOC100181450 LOC100181450 F6TIU3_CIOIN F6TIU3_CIOIN F6SLQ4_CIOIN F6SLQ4_CIOIN LOC100180640 LOC100180640 LOC100175749 LOC100175749 F6WJQ0_CIOIN F6WJQ0_CIOIN F7B587_CIOIN F7B587_CIOIN F7B4V3_CIOIN F7B4V3_CIOIN F6YFY0_CIOIN F6YFY0_CIOIN F6XBT4_CIOIN F6XBT4_CIOIN F6R8V3_CIOIN F6R8V3_CIOIN LOC100176033 LOC100176033 LOC100183816 LOC100183816 LOC100183027 LOC100183027 LOC100185869 LOC100185869 F6Z998_CIOIN F6Z998_CIOIN F6U602_CIOIN F6U602_CIOIN LOC100182402 LOC100182402 LOC100187034 LOC100187034 LOC100175151 LOC100175151 rs23 rs23 LOC101243211 LOC101243211 LOC100187398 LOC100187398 F6Q4K7_CIOIN F6Q4K7_CIOIN LOC100177118 LOC100177118 LOC100184468 LOC100184468 F6ZAE1_CIOIN F6ZAE1_CIOIN LOC101242128 LOC101242128 F6SVM4_CIOIN F6SVM4_CIOIN F6RZE8_CIOIN F6RZE8_CIOIN F7A373_CIOIN F7A373_CIOIN F6ZKI9_CIOIN F6ZKI9_CIOIN F6SSM8_CIOIN F6SSM8_CIOIN F6Z658_CIOIN F6Z658_CIOIN LOC100179536 LOC100179536 LOC100186763 LOC100186763 LOC100177652 LOC100177652 LOC100186345 LOC100186345 F6WWT1_CIOIN F6WWT1_CIOIN LOC100184647 LOC100184647 LOC100176316 LOC100176316 F6SD13_CIOIN F6SD13_CIOIN LOC100185410 LOC100185410 LOC100180716 LOC100180716 LOC100184404 LOC100184404 LOC108951018 LOC108951018 LOC100180455 LOC100180455 LOC100180699 LOC100180699 F7AMW5_CIOIN F7AMW5_CIOIN F6TV34_CIOIN F6TV34_CIOIN F6TEX2_CIOIN F6TEX2_CIOIN LOC100185367 LOC100185367 LOC100184231 LOC100184231 LOC100179092 LOC100179092 LOC100177458 LOC100177458 F6YF30_CIOIN F6YF30_CIOIN LOC100175021 LOC100175021 LOC100182085 LOC100182085 LOC100180220 LOC100180220 F7BI62_CIOIN F7BI62_CIOIN LOC100182417 LOC100182417 F6Y6X7_CIOIN F6Y6X7_CIOIN LOC100187159 LOC100187159 LOC100186399 LOC100186399 rl32 rl32 LOC100183305 LOC100183305 F6V6F4_CIOIN F6V6F4_CIOIN F6V6D5_CIOIN F6V6D5_CIOIN F6SID0_CIOIN F6SID0_CIOIN LOC100175959 LOC100175959 LOC100186361 LOC100186361 F6R0P0_CIOIN F6R0P0_CIOIN F6S8X6_CIOIN F6S8X6_CIOIN H2Y2U3_CIOIN H2Y2U3_CIOIN H2Y1Y8_CIOIN H2Y1Y8_CIOIN H2Y1B5_CIOIN H2Y1B5_CIOIN H2Y0Q6_CIOIN H2Y0Q6_CIOIN LOC100175325 LOC100175325 H2Y064_CIOIN H2Y064_CIOIN LOC100186308 LOC100186308 r35a r35a H2XWE4_CIOIN H2XWE4_CIOIN LOC100184857 LOC100184857 rps13 rps13 LOC100180046 LOC100180046 H2XTB0_CIOIN H2XTB0_CIOIN H2XSQ8_CIOIN H2XSQ8_CIOIN LOC100180055 LOC100180055 H2XPE7_CIOIN H2XPE7_CIOIN LOC113474176 LOC113474176 LOC100175738 LOC100175738 H2XKP6_CIOIN H2XKP6_CIOIN H2XKN7_CIOIN H2XKN7_CIOIN H2XKD8_CIOIN H2XKD8_CIOIN F6WZ37_CIOIN F6WZ37_CIOIN LOC108949278 LOC108949278 LOC100186249 LOC100186249 LOC100181712 LOC100181712 LOC100177158 LOC100177158 F6YMZ5_CIOIN F6YMZ5_CIOIN LOC100186730 LOC100186730 LOC100184047 LOC100184047 LOC100183019 LOC100183019 F6XMT9_CIOIN F6XMT9_CIOIN F6XMP8_CIOIN F6XMP8_CIOIN LOC100177596 LOC100177596 F6WN06_CIOIN F6WN06_CIOIN LOC100181765 LOC100181765 LOC100177507 LOC100177507 F7BH80_CIOIN F7BH80_CIOIN LOC100180777 LOC100180777 LOC100182767 LOC100182767 F6TJY9_CIOIN F6TJY9_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100181450Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (554 aa)
F6TIU3_CIOINEukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (326 aa)
F6SLQ4_CIOINUncharacterized protein. (257 aa)
LOC10018064060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
LOC10017574960S ribosomal protein L26. (145 aa)
F6WJQ0_CIOINRibosomal_L16 domain-containing protein. (202 aa)
F7B587_CIOINUncharacterized protein. (108 aa)
F7B4V3_CIOINUncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
F6YFY0_CIOINTr-type G domain-containing protein. (473 aa)
F6XBT4_CIOINRibosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (206 aa)
F6R8V3_CIOINEukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1051 aa)
LOC100176033KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
LOC100183816Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (306 aa)
LOC10018302740S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
LOC10018586940S ribosomal protein S11-like. (157 aa)
F6Z998_CIOINUncharacterized protein. (133 aa)
F6U602_CIOINW2 domain-containing protein. (426 aa)
LOC10018240260S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (178 aa)
LOC10018703440S ribosomal protein S24. (132 aa)
LOC10017515140S ribosomal protein S10. (159 aa)
rs2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
LOC101243211Translation initiation factor eIF-2B subunit alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (305 aa)
LOC100187398Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (188 aa)
F6Q4K7_CIOIN40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (205 aa)
LOC100177118Uncharacterized protein. (411 aa)
LOC10018446840S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (138 aa)
F6ZAE1_CIOINRRM domain-containing protein. (249 aa)
LOC101242128Uncharacterized protein. (246 aa)
F6SVM4_CIOINEukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (221 aa)
F6RZE8_CIOINRRM domain-containing protein. (329 aa)
F7A373_CIOINS4 RNA-binding domain-containing protein. (102 aa)
F6ZKI9_CIOIN40S_S4_C domain-containing protein. (80 aa)
F6SSM8_CIOINRibos_L4_asso_C domain-containing protein. (281 aa)
F6Z658_CIOINUncharacterized protein. (203 aa)
LOC10017953660S ribosomal protein L35. (123 aa)
LOC10018676360S ribosomal protein L5. (296 aa)
LOC10017765260S ribosomal protein L9. (191 aa)
LOC10018634560S ribosomal protein L7a. (268 aa)
F6WWT1_CIOINeIF2B_5 domain-containing protein. (267 aa)
LOC10018464740S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (112 aa)
LOC10017631660S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family. (145 aa)
F6SD13_CIOINUncharacterized protein. (56 aa)
LOC100185410MPN domain-containing protein. (204 aa)
LOC10018071660S ribosomal protein L31. (125 aa)
LOC10018440460S ribosomal protein L17-like; Belongs to the universal ribosomal protein uL22 family. (183 aa)
LOC10895101860S ribosomal protein L21-like isoform X3. (160 aa)
LOC10018045540S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
LOC10018069960S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (98 aa)
F7AMW5_CIOINUncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (101 aa)
F6TV34_CIOINFGE-sulfatase domain-containing protein. (351 aa)
F6TEX2_CIOINUncharacterized protein. (74 aa)
LOC10018536760S ribosomal protein L8. (256 aa)
LOC10018423160S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
LOC10017909260S ribosomal protein L18. (188 aa)
LOC10017745860S ribosomal protein L37a. (90 aa)
F6YF30_CIOINUncharacterized protein. (88 aa)
LOC100175021Uncharacterized protein LOC100175021 isoform X2. (380 aa)
LOC100182085Uncharacterized protein LOC100182085 isoform X1. (227 aa)
LOC10018022060S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
F7BI62_CIOINNTP_transferase domain-containing protein. (453 aa)
LOC100182417Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (498 aa)
F6Y6X7_CIOINRibosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (147 aa)
LOC100187159Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (356 aa)
LOC10018639960S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
rl32Uncharacterized protein. (136 aa)
LOC10018330560S ribosomal protein L30. (118 aa)
F6V6F4_CIOINW2 domain-containing protein. (563 aa)
F6V6D5_CIOINNTP_transferase domain-containing protein. (267 aa)
F6SID0_CIOINEukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (443 aa)
LOC10017595960S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
LOC10018636160S ribosomal protein L6. (246 aa)
F6R0P0_CIOINRibosomal_S10 domain-containing protein. (128 aa)
F6S8X6_CIOINUncharacterized protein. (143 aa)
H2Y2U3_CIOINEukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (240 aa)
H2Y1Y8_CIOINUncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
H2Y1B5_CIOINUncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (68 aa)
H2Y0Q6_CIOINEukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (272 aa)
LOC100175325Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (207 aa)
H2Y064_CIOINUncharacterized protein. (156 aa)
LOC100186308Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (148 aa)
r35aUncharacterized protein. (121 aa)
H2XWE4_CIOINS5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
LOC10018485740S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
LOC100180046Uncharacterized protein LOC100180046. (303 aa)
H2XTB0_CIOIN40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (303 aa)
H2XSQ8_CIOINUncharacterized protein. (152 aa)
LOC100180055Uncharacterized protein LOC100180055. (140 aa)
H2XPE7_CIOINUncharacterized protein. (122 aa)
LOC113474176kxDL motif-containing protein 1-like. (139 aa)
LOC100175738Uncharacterized protein. (134 aa)
H2XKP6_CIOINRibosomal_L14e domain-containing protein. (133 aa)
H2XKN7_CIOINUncharacterized protein. (116 aa)
H2XKD8_CIOIN60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (58 aa)
F6WZ37_CIOINUncharacterized protein. (51 aa)
LOC10894927860S ribosomal protein L22-like isoform X1. (131 aa)
LOC10018624940S ribosomal protein S19. (148 aa)
LOC10018171240S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
LOC10017715840S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
F6YMZ5_CIOINUncharacterized protein. (68 aa)
LOC10018673040S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
LOC10018404760S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (220 aa)
LOC100183019Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (154 aa)
F6XMT9_CIOINUncharacterized protein. (261 aa)
F6XMP8_CIOINUncharacterized protein. (501 aa)
LOC100177596Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (430 aa)
F6WN06_CIOINUncharacterized protein. (195 aa)
LOC100181765Eukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (371 aa)
LOC10017750760S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
F7BH80_CIOINUncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (482 aa)
LOC100180777serine/Arginine-related protein 53-like. (274 aa)
LOC100182767Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (700 aa)
F6TJY9_CIOIN40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (79 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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