33 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zf(c2h2)-114	General transcription factor IIH subunit. (395 aa)
	F7AS59_CIOIN	SprT-like domain-containing protein. (197 aa)
	LOC100184966	Histone H2B-like; Belongs to the histone H2B family. (121 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	LOC100183594	General transcription and DNA repair factor IIH helicase subunit XPB. (794 aa)
	LOC100184910	cyclin-D-binding Myb-like transcription factor 1. (438 aa)
	LOC100183393	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1141 aa)
	F6YSX7_CIOIN	RPOLD domain-containing protein. (345 aa)
	F6RMT1_CIOIN	Uncharacterized protein. (551 aa)
	LOC100177816	cyclin-H; Belongs to the cyclin family. (329 aa)
	F6U5V8_CIOIN	Uncharacterized protein. (363 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	mta	Ci-MTA protein. (661 aa)
	F6S7U3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (182 aa)
	F6S7T3_CIOIN	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (238 aa)
	F6SIN5_CIOIN	RNA_pol_Rpb1_5 domain-containing protein. (749 aa)
	LOC104265886	Histone-binding protein RBBP4. (431 aa)
	zf(ring)-55	Zinc finger protein. (323 aa)
	ubf	Transcription factor protein isoform X2. (789 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6WVE1_CIOIN	UBN_AB domain-containing protein. (272 aa)
	F6Z277_CIOIN	Uncharacterized protein. (210 aa)
	LOC100182246	RNA polymerase I-specific transcription initiation factor RRN3. (588 aa)
	F6V2C0_CIOIN	Uncharacterized protein. (228 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	H2XPB0_CIOIN	RPOLA_N domain-containing protein. (207 aa)
	LOC100184077	Transcriptional repressor p66-beta isoform X1. (683 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC100184165	General transcription factor IIH subunit 3-like. (309 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2Y0G6_CIOIN	Uncharacterized protein. (532 aa)
	H2Y0J7_CIOIN	RPOLA_N domain-containing protein. (225 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RMT1_CIOIN	F6S7T3_CIOIN	ENSCINP00000009626	ENSCINP00000014977	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.971
F6RMT1_CIOIN	F6S7U3_CIOIN	ENSCINP00000009626	ENSCINP00000014976	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.971
F6RMT1_CIOIN	F6YSX7_CIOIN	ENSCINP00000009626	ENSCINP00000007337	Uncharacterized protein.	RPOLD domain-containing protein.	0.819
F6RMT1_CIOIN	F6Z277_CIOIN	ENSCINP00000009626	ENSCINP00000022479	Uncharacterized protein.	Uncharacterized protein.	0.878
F6RMT1_CIOIN	H2XJG6_CIOIN	ENSCINP00000009626	ENSCINP00000029798	Uncharacterized protein.	Uncharacterized protein.	0.931
F6RMT1_CIOIN	H2XVJ2_CIOIN	ENSCINP00000009626	ENSCINP00000033676	Uncharacterized protein.	Uncharacterized protein.	0.943
F6RMT1_CIOIN	H2XXZ3_CIOIN	ENSCINP00000009626	ENSCINP00000034527	Uncharacterized protein.	Uncharacterized protein.	0.726
F6RMT1_CIOIN	LOC100177214	ENSCINP00000009626	ENSCINP00000005464	Uncharacterized protein.	Uncharacterized protein.	0.948
F6RMT1_CIOIN	LOC100177816	ENSCINP00000009626	ENSCINP00000010895	Uncharacterized protein.	cyclin-H; Belongs to the cyclin family.	0.993
F6RMT1_CIOIN	LOC100178283	ENSCINP00000009626	ENSCINP00000021822	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.932
F6RMT1_CIOIN	LOC100182246	ENSCINP00000009626	ENSCINP00000023432	Uncharacterized protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.654
F6RMT1_CIOIN	LOC100183393	ENSCINP00000009626	ENSCINP00000006863	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.797
F6RMT1_CIOIN	LOC100183594	ENSCINP00000009626	ENSCINP00000005835	Uncharacterized protein.	General transcription and DNA repair factor IIH helicase subunit XPB.	0.999
F6RMT1_CIOIN	LOC100183843	ENSCINP00000009626	ENSCINP00000011952	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.410
F6RMT1_CIOIN	LOC100184165	ENSCINP00000009626	ENSCINP00000033718	Uncharacterized protein.	General transcription factor IIH subunit 3-like.	0.999
F6RMT1_CIOIN	LOC100184966	ENSCINP00000009626	ENSCINP00000002195	Uncharacterized protein.	Histone H2B-like; Belongs to the histone H2B family.	0.443
F6RMT1_CIOIN	LOC101242260	ENSCINP00000009626	ENSCINP00000032951	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.931
F6RMT1_CIOIN	Zf(c2h2)-114	ENSCINP00000009626	ENSCINP00000001371	Uncharacterized protein.	General transcription factor IIH subunit.	0.999
F6RMT1_CIOIN	ubf	ENSCINP00000009626	ENSCINP00000021757	Uncharacterized protein.	Transcription factor protein isoform X2.	0.664
F6RMT1_CIOIN	zf(ring)-55	ENSCINP00000009626	ENSCINP00000016979	Uncharacterized protein.	Zinc finger protein.	0.998