29 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ci-ZF(C2H2)-86	Zinc finger protein. (315 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	F6YSX7_CIOIN	RPOLD domain-containing protein. (345 aa)
	cgrp-rcp	Calcitonin gene-related Peptide receptor component protein. (124 aa)
	F7B658_CIOIN	TFIIB-type domain-containing protein. (658 aa)
	LOC100180654	Uncharacterized protein LOC100180654. (729 aa)
	LOC100186818	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (520 aa)
	F6ZVH0_CIOIN	Uncharacterized protein. (205 aa)
	F6ZVG1_CIOIN	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (275 aa)
	LOC100184400	DNA-directed RNA polymerase III subunit RPC4. (349 aa)
	LOC100181260	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (215 aa)
	LOC100187256	General transcription factor 3C polypeptide 6-like. (150 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6Z277_CIOIN	Uncharacterized protein. (210 aa)
	F6UKG9_CIOIN	Uncharacterized protein. (255 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	H2XUZ0_CIOIN	Uncharacterized protein. (138 aa)
	LOC104266855	DNA-directed RNA polymerase III subunit RPC8-like. (205 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XR13_CIOIN	RNA_pol_Rpb2_6 domain-containing protein. (135 aa)
	H2XP40_CIOIN	RNA_pol_Rpb2_1 domain-containing protein. (178 aa)
	polr3k	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6ZZW3_CIOIN	Uncharacterized protein. (213 aa)
	F6VJA5_CIOIN	Uncharacterized protein. (344 aa)
	F6T8R8_CIOIN	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (311 aa)
	F6UYH8_CIOIN	Tau95_N domain-containing protein. (190 aa)
	F6VN53_CIOIN	Uncharacterized protein. (752 aa)
	F6QUR1_CIOIN	B-block_TFIIIC domain-containing protein. (203 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-ZF(C2H2)-86	F6QUR1_CIOIN	ENSCINP00000023699	ENSCINP00000025536	Zinc finger protein.	B-block_TFIIIC domain-containing protein.	0.653
Ci-ZF(C2H2)-86	F6T8R8_CIOIN	ENSCINP00000023699	ENSCINP00000027447	Zinc finger protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.456
Ci-ZF(C2H2)-86	F6UYH8_CIOIN	ENSCINP00000023699	ENSCINP00000026597	Zinc finger protein.	Tau95_N domain-containing protein.	0.468
Ci-ZF(C2H2)-86	F6VJA5_CIOIN	ENSCINP00000023699	ENSCINP00000028073	Zinc finger protein.	Uncharacterized protein.	0.653
Ci-ZF(C2H2)-86	F6VN53_CIOIN	ENSCINP00000023699	ENSCINP00000026238	Zinc finger protein.	Uncharacterized protein.	0.561
Ci-ZF(C2H2)-86	F6YSX7_CIOIN	ENSCINP00000023699	ENSCINP00000007337	Zinc finger protein.	RPOLD domain-containing protein.	0.485
Ci-ZF(C2H2)-86	F6ZZW3_CIOIN	ENSCINP00000023699	ENSCINP00000029392	Zinc finger protein.	Uncharacterized protein.	0.400
Ci-ZF(C2H2)-86	F7B658_CIOIN	ENSCINP00000023699	ENSCINP00000008641	Zinc finger protein.	TFIIB-type domain-containing protein.	0.627
Ci-ZF(C2H2)-86	H2XVJ2_CIOIN	ENSCINP00000023699	ENSCINP00000033676	Zinc finger protein.	Uncharacterized protein.	0.507
Ci-ZF(C2H2)-86	LOC100177214	ENSCINP00000023699	ENSCINP00000005464	Zinc finger protein.	Uncharacterized protein.	0.562
Ci-ZF(C2H2)-86	LOC100178283	ENSCINP00000023699	ENSCINP00000021822	Zinc finger protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.472
Ci-ZF(C2H2)-86	LOC100180654	ENSCINP00000023699	ENSCINP00000013489	Zinc finger protein.	Uncharacterized protein LOC100180654.	0.504
Ci-ZF(C2H2)-86	LOC100184400	ENSCINP00000023699	ENSCINP00000016627	Zinc finger protein.	DNA-directed RNA polymerase III subunit RPC4.	0.425
Ci-ZF(C2H2)-86	LOC100186818	ENSCINP00000023699	ENSCINP00000014424	Zinc finger protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.539
Ci-ZF(C2H2)-86	cgrp-rcp	ENSCINP00000023699	ENSCINP00000007376	Zinc finger protein.	Calcitonin gene-related Peptide receptor component protein.	0.471
Ci-ZF(C2H2)-86	polr3k	ENSCINP00000023699	ENSCINP00000030689	Zinc finger protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.495
F6QUR1_CIOIN	Ci-ZF(C2H2)-86	ENSCINP00000025536	ENSCINP00000023699	B-block_TFIIIC domain-containing protein.	Zinc finger protein.	0.653
F6QUR1_CIOIN	F6T8R8_CIOIN	ENSCINP00000025536	ENSCINP00000027447	B-block_TFIIIC domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.490
F6QUR1_CIOIN	F6UKG9_CIOIN	ENSCINP00000025536	ENSCINP00000022587	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.478
F6QUR1_CIOIN	F6UYH8_CIOIN	ENSCINP00000025536	ENSCINP00000026597	B-block_TFIIIC domain-containing protein.	Tau95_N domain-containing protein.	0.916