STRINGSTRING
LOC100185508 LOC100185508 LOC100183259 LOC100183259 F6YWB6_CIOIN F6YWB6_CIOIN LOC100175959 LOC100175959 LOC100186361 LOC100186361 F6R0P0_CIOIN F6R0P0_CIOIN F7AG76_CIOIN F7AG76_CIOIN F6YBA5_CIOIN F6YBA5_CIOIN F6S8X6_CIOIN F6S8X6_CIOIN LOC100182572 LOC100182572 LOC100181712 LOC100181712 LOC100177158 LOC100177158 LOC100175516 LOC100175516 LOC100186483 LOC100186483 F6YMZ5_CIOIN F6YMZ5_CIOIN F6RA65_CIOIN F6RA65_CIOIN F6R4R6_CIOIN F6R4R6_CIOIN LOC100186730 LOC100186730 LOC100184047 LOC100184047 LOC100183019 LOC100183019 F6UDJ0_CIOIN F6UDJ0_CIOIN LOC100178939 LOC100178939 LOC100185465 LOC100185465 F6SDI7_CIOIN F6SDI7_CIOIN F6QDE3_CIOIN F6QDE3_CIOIN LOC100182540 LOC100182540 F6W1S6_CIOIN F6W1S6_CIOIN LOC100177507 LOC100177507 F6ZN98_CIOIN F6ZN98_CIOIN F6ZN43_CIOIN F6ZN43_CIOIN F6Y8C3_CIOIN F6Y8C3_CIOIN F6U6H9_CIOIN F6U6H9_CIOIN cirgg1 cirgg1 F7A4T6_CIOIN F7A4T6_CIOIN LOC100180640 LOC100180640 LOC100175749 LOC100175749 F6WJQ0_CIOIN F6WJQ0_CIOIN F7B587_CIOIN F7B587_CIOIN LOC100177492 LOC100177492 LOC100183089 LOC100183089 LOC100178269 LOC100178269 F6XBT4_CIOIN F6XBT4_CIOIN LOC100176602 LOC100176602 LOC100184256 LOC100184256 F6PLR6_CIOIN F6PLR6_CIOIN LOC100180728 LOC100180728 LOC100176033 LOC100176033 LOC100186181 LOC100186181 LOC100187346 LOC100187346 F6ZL99_CIOIN F6ZL99_CIOIN LOC100177375 LOC100177375 LOC100183873 LOC100183873 F7BQ53_CIOIN F7BQ53_CIOIN F6U609_CIOIN F6U609_CIOIN ENSCINP00000011586 ENSCINP00000011586 F6TFE2_CIOIN F6TFE2_CIOIN LOC100182402 LOC100182402 LOC100186454 LOC100186454 F6PZG6_CIOIN F6PZG6_CIOIN LOC100187034 LOC100187034 F6YXI8_CIOIN F6YXI8_CIOIN F6YWW0_CIOIN F6YWW0_CIOIN LOC100183724 LOC100183724 LOC100182700 LOC100182700 rs23 rs23 F6Q4K7_CIOIN F6Q4K7_CIOIN LOC100180799 LOC100180799 LOC100177118 LOC100177118 LOC100180054 LOC100180054 LOC101242128 LOC101242128 F6S765_CIOIN F6S765_CIOIN F7A373_CIOIN F7A373_CIOIN F6ZKI9_CIOIN F6ZKI9_CIOIN F6ZIU2_CIOIN F6ZIU2_CIOIN F6TGX7_CIOIN F6TGX7_CIOIN F6SSM8_CIOIN F6SSM8_CIOIN F6S4U2_CIOIN F6S4U2_CIOIN LOC100179536 LOC100179536 LOC100186763 LOC100186763 LOC100182618 LOC100182618 LOC100181888 LOC100181888 LOC100183682 LOC100183682 F6W132_CIOIN F6W132_CIOIN LOC100177652 LOC100177652 LOC100186345 LOC100186345 F6WWW4_CIOIN F6WWW4_CIOIN F6TKH9_CIOIN F6TKH9_CIOIN LOC100180019 LOC100180019 F6XG84_CIOIN F6XG84_CIOIN LOC100184403 LOC100184403 LOC100176328-2 LOC100176328-2 LOC100176316 LOC100176316 F6SD13_CIOIN F6SD13_CIOIN F6ZDT1_CIOIN F6ZDT1_CIOIN LOC100179576 LOC100179576 LOC100180716 LOC100180716 LOC100184404 LOC100184404 LOC108951018 LOC108951018 LOC100180455 LOC100180455 F6TAD8_CIOIN F6TAD8_CIOIN LOC100180699 LOC100180699 F6XVJ4_CIOIN F6XVJ4_CIOIN F6TEX2_CIOIN F6TEX2_CIOIN LOC100185367 LOC100185367 LOC100184231 LOC100184231 F6RBK2_CIOIN F6RBK2_CIOIN LOC100179092 LOC100179092 LOC100177458 LOC100177458 F6YF30_CIOIN F6YF30_CIOIN LOC100183007 LOC100183007 F6V2B2_CIOIN F6V2B2_CIOIN LOC100187445 LOC100187445 LOC100175793 LOC100175793 Wbscr27-like Wbscr27-like LOC100185027 LOC100185027 F6TCX3_CIOIN F6TCX3_CIOIN LOC100180220 LOC100180220 F6UYV3_CIOIN F6UYV3_CIOIN F6Y6X7_CIOIN F6Y6X7_CIOIN LOC100182394 LOC100182394 LOC100175264 LOC100175264 F6T6V3_CIOIN F6T6V3_CIOIN LOC100184303 LOC100184303 LOC100186399 LOC100186399 rl32 rl32 F6ZRR5_CIOIN F6ZRR5_CIOIN LOC100183305 LOC100183305 F6Y252_CIOIN F6Y252_CIOIN LOC100175357 LOC100175357 LOC100186249 LOC100186249 LOC108949278 LOC108949278 F6WZ37_CIOIN F6WZ37_CIOIN H2XJM9_CIOIN H2XJM9_CIOIN LOC100177882 LOC100177882 H2XKD8_CIOIN H2XKD8_CIOIN LOC100176401 LOC100176401 LOC100175738 LOC100175738 LOC100187471 LOC100187471 LOC100178413 LOC100178413 LOC100179273 LOC100179273 LOC100178383 LOC100178383 LOC113474176 LOC113474176 H2XQ81_CIOIN H2XQ81_CIOIN LOC100180269 LOC100180269 H2XSM0_CIOIN H2XSM0_CIOIN H2XSQ8_CIOIN H2XSQ8_CIOIN H2XT24_CIOIN H2XT24_CIOIN LOC101242218 LOC101242218 H2XTN0_CIOIN H2XTN0_CIOIN rps13 rps13 H2XU65_CIOIN H2XU65_CIOIN H2XU97_CIOIN H2XU97_CIOIN H2XUI3_CIOIN H2XUI3_CIOIN H2XUU0_CIOIN H2XUU0_CIOIN LOC100184857 LOC100184857 H2XWE4_CIOIN H2XWE4_CIOIN r35a r35a H2XWG7_CIOIN H2XWG7_CIOIN LOC113474038 LOC113474038 H2XWZ3_CIOIN H2XWZ3_CIOIN LOC100178209 LOC100178209 H2XXY6_CIOIN H2XXY6_CIOIN H2XY32_CIOIN H2XY32_CIOIN H2XY59_CIOIN H2XY59_CIOIN H2XYT6_CIOIN H2XYT6_CIOIN LOC100182886 LOC100182886 H2XZT6_CIOIN H2XZT6_CIOIN H2Y058_CIOIN H2Y058_CIOIN LOC100175325 LOC100175325 LOC100184042 LOC100184042 H2Y1B5_CIOIN H2Y1B5_CIOIN H2Y1Y8_CIOIN H2Y1Y8_CIOIN LOC100181824 LOC100181824 LOC100182620 LOC100182620
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100185508WD repeat-containing protein 43. (630 aa)
LOC100183259Uncharacterized protein. (721 aa)
F6YWB6_CIOINNucleolar protein 6. (831 aa)
LOC10017595960S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
LOC10018636160S ribosomal protein L6. (246 aa)
F6R0P0_CIOINRibosomal_S10 domain-containing protein. (128 aa)
F7AG76_CIOINUncharacterized protein. (253 aa)
F6YBA5_CIOINUncharacterized protein. (1170 aa)
F6S8X6_CIOINUncharacterized protein. (143 aa)
LOC100182572Bystin-like. (436 aa)
LOC10018171240S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
LOC10017715840S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
LOC100175516Uncharacterized protein. (603 aa)
LOC100186483Probable ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (449 aa)
F6YMZ5_CIOINUncharacterized protein. (68 aa)
F6RA65_CIOINRIO domain-containing protein. (504 aa)
F6R4R6_CIOINHRDC domain-containing protein. (292 aa)
LOC10018673040S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
LOC10018404760S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (220 aa)
LOC100183019Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (154 aa)
F6UDJ0_CIOINUncharacterized protein. (1742 aa)
LOC100178939U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (579 aa)
LOC100185465U3 small nucleolar ribonucleoprotein protein IMP4-like. (288 aa)
F6SDI7_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (435 aa)
F6QDE3_CIOINBms1-type G domain-containing protein. (1061 aa)
LOC100182540Uncharacterized protein. (1030 aa)
F6W1S6_CIOINUncharacterized protein. (403 aa)
LOC10017750760S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
F6ZN98_CIOINDRIM domain-containing protein. (2648 aa)
F6ZN43_CIOINWD_REPEATS_REGION domain-containing protein. (351 aa)
F6Y8C3_CIOINRNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (956 aa)
F6U6H9_CIOINMethyltransf_11 domain-containing protein. (199 aa)
cirgg1Uncharacterized protein. (436 aa)
F7A4T6_CIOINRNB domain-containing protein. (741 aa)
LOC10018064060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
LOC10017574960S ribosomal protein L26. (145 aa)
F6WJQ0_CIOINRibosomal_L16 domain-containing protein. (202 aa)
F7B587_CIOINUncharacterized protein. (108 aa)
LOC100177492U3 small nucleolar ribonucleoprotein protein IMP3. (181 aa)
LOC100183089Exosome complex component RRP43. (279 aa)
LOC100178269Exonuclease domain-containing protein. (196 aa)
F6XBT4_CIOINRibosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (206 aa)
LOC100176602Methyltransferase-like protein 27. (224 aa)
LOC100184256Exosome complex component RRP42-like. (290 aa)
F6PLR6_CIOINUncharacterized protein. (176 aa)
LOC100180728WD_REPEATS_REGION domain-containing protein. (453 aa)
LOC100176033KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
LOC100186181rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
LOC100187346Uncharacterized protein. (580 aa)
F6ZL99_CIOINUtp12 domain-containing protein. (238 aa)
LOC100177375Uncharacterized protein LOC100177375. (249 aa)
LOC100183873WD_REPEATS_REGION domain-containing protein. (447 aa)
F7BQ53_CIOINWD_REPEATS_REGION domain-containing protein. (501 aa)
F6U609_CIOINNop domain-containing protein. (533 aa)
ENSCINP00000011586Uncharacterized protein. (235 aa)
F6TFE2_CIOINUncharacterized protein. (283 aa)
LOC10018240260S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (178 aa)
LOC100186454Uncharacterized protein. (907 aa)
F6PZG6_CIOINUncharacterized protein. (251 aa)
LOC10018703440S ribosomal protein S24. (132 aa)
F6YXI8_CIOINRibosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (786 aa)
F6YWW0_CIOINMethyltransf_11 domain-containing protein. (239 aa)
LOC100183724Alpha-tectorin-like. (434 aa)
LOC100182700SAP domain-containing protein. (320 aa)
rs2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
F6Q4K7_CIOIN40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (205 aa)
LOC10018079960S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
LOC100177118Uncharacterized protein. (411 aa)
LOC100180054U3 small nucleolar RNA-associated protein 4 homolog. (666 aa)
LOC101242128Uncharacterized protein. (246 aa)
F6S765_CIOINNUC202 domain-containing protein. (565 aa)
F7A373_CIOINS4 RNA-binding domain-containing protein. (102 aa)
F6ZKI9_CIOIN40S_S4_C domain-containing protein. (80 aa)
F6ZIU2_CIOINUncharacterized protein. (324 aa)
F6TGX7_CIOINUncharacterized protein. (364 aa)
F6SSM8_CIOINRibos_L4_asso_C domain-containing protein. (281 aa)
F6S4U2_CIOINCP-type G domain-containing protein. (538 aa)
LOC10017953660S ribosomal protein L35. (123 aa)
LOC10018676360S ribosomal protein L5. (296 aa)
LOC100182618Ipi1_N domain-containing protein. (745 aa)
LOC100181888Uncharacterized protein LOC100181888. (234 aa)
LOC100183682Uncharacterized protein. (834 aa)
F6W132_CIOINBP28CT domain-containing protein. (414 aa)
LOC10017765260S ribosomal protein L9. (191 aa)
LOC10018634560S ribosomal protein L7a. (268 aa)
F6WWW4_CIOINWD_REPEATS_REGION domain-containing protein. (786 aa)
F6TKH9_CIOINRNase_PH domain-containing protein. (247 aa)
LOC100180019RNA-binding protein PNO1. (233 aa)
F6XG84_CIOINU3snoRNP10 domain-containing protein. (413 aa)
LOC100184403Uncharacterized protein. (237 aa)
LOC100176328-2Uncharacterized protein LOC100176328 isoform X2. (263 aa)
LOC10017631660S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family. (145 aa)
F6SD13_CIOINUncharacterized protein. (56 aa)
F6ZDT1_CIOINExonuclease domain-containing protein. (256 aa)
LOC100179576CLP1_P domain-containing protein. (557 aa)
LOC10018071660S ribosomal protein L31. (125 aa)
LOC10018440460S ribosomal protein L17-like; Belongs to the universal ribosomal protein uL22 family. (183 aa)
LOC10895101860S ribosomal protein L21-like isoform X3. (160 aa)
LOC10018045540S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
F6TAD8_CIOINCBF domain-containing protein. (511 aa)
LOC10018069960S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (98 aa)
F6XVJ4_CIOINUncharacterized protein. (733 aa)
F6TEX2_CIOINUncharacterized protein. (74 aa)
LOC10018536760S ribosomal protein L8. (256 aa)
LOC10018423160S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
F6RBK2_CIOINRibosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (427 aa)
LOC10017909260S ribosomal protein L18. (188 aa)
LOC10017745860S ribosomal protein L37a. (90 aa)
F6YF30_CIOINUncharacterized protein. (88 aa)
LOC100183007Probable rRNA-processing protein EBP2 isoform X1. (177 aa)
F6V2B2_CIOINRNase_PH domain-containing protein. (280 aa)
LOC100187445Probable ATP-dependent RNA helicase DDX49 isoform X1; Belongs to the DEAD box helicase family. (457 aa)
LOC100175793Uncharacterized protein LOC100175793 isoform X3. (234 aa)
Wbscr27-likeMethyltransf_11 domain-containing protein. (238 aa)
LOC100185027Uncharacterized protein LOC100185027. (235 aa)
F6TCX3_CIOINUncharacterized protein. (167 aa)
LOC10018022060S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
F6UYV3_CIOINMethyltransf_11 domain-containing protein. (160 aa)
F6Y6X7_CIOINRibosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (147 aa)
LOC100182394Exosome complex component RRP4. (302 aa)
LOC100175264Uncharacterized protein LOC100175264. (221 aa)
F6T6V3_CIOINNucleolar protein 6. (234 aa)
LOC100184303Uncharacterized protein. (463 aa)
LOC10018639960S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
rl32Uncharacterized protein. (136 aa)
F6ZRR5_CIOINUncharacterized protein. (475 aa)
LOC10018330560S ribosomal protein L30. (118 aa)
F6Y252_CIOINGN3L_Grn1 domain-containing protein. (71 aa)
LOC100175357Uromodulin. (445 aa)
LOC10018624940S ribosomal protein S19. (148 aa)
LOC10894927860S ribosomal protein L22-like isoform X1. (131 aa)
F6WZ37_CIOINUncharacterized protein. (51 aa)
H2XJM9_CIOINUncharacterized protein. (96 aa)
LOC100177882Ribonuclease P protein subunit p30-like. (270 aa)
H2XKD8_CIOIN60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (58 aa)
LOC100176401Methyltransf_25 domain-containing protein. (236 aa)
LOC100175738Uncharacterized protein. (134 aa)
LOC100187471Uncharacterized protein; Belongs to the RNR ribonuclease family. (916 aa)
LOC100178413KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (358 aa)
LOC100179273Sas10 domain-containing protein. (465 aa)
LOC100178383RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (397 aa)
LOC113474176kxDL motif-containing protein 1-like. (139 aa)
H2XQ81_CIOINPINc domain-containing protein. (201 aa)
LOC100180269Uncharacterized protein. (866 aa)
H2XSM0_CIOIN5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (832 aa)
H2XSQ8_CIOINUncharacterized protein. (152 aa)
H2XT24_CIOINUncharacterized protein. (376 aa)
LOC101242218Uncharacterized protein LOC101242218 isoform X1. (233 aa)
H2XTN0_CIOINUncharacterized protein. (370 aa)
rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
H2XU65_CIOINKH_dom_type_1 domain-containing protein. (241 aa)
H2XU97_CIOINHRDC domain-containing protein. (194 aa)
H2XUI3_CIOINUncharacterized protein. (208 aa)
H2XUU0_CIOINMethyltranfer_dom domain-containing protein. (210 aa)
LOC10018485740S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
H2XWE4_CIOINS5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (280 aa)
r35aUncharacterized protein. (121 aa)
H2XWG7_CIOINU3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (233 aa)
LOC113474038Methyltransferase-like protein 27. (242 aa)
H2XWZ3_CIOINPutative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (736 aa)
LOC100178209Nop domain-containing protein. (561 aa)
H2XXY6_CIOINTHUMP domain-containing protein. (283 aa)
H2XY32_CIOINHelicase C-terminal domain-containing protein. (181 aa)
H2XY59_CIOINMethyltransf_11 domain-containing protein. (235 aa)
H2XYT6_CIOIN3'-5' exonuclease domain-containing protein. (261 aa)
LOC100182886Ribonuclease P protein subunit p21. (132 aa)
H2XZT6_CIOINSAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (682 aa)
H2Y058_CIOINUncharacterized protein. (191 aa)
LOC100175325Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (207 aa)
LOC100184042Uncharacterized protein. (611 aa)
H2Y1B5_CIOINUncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (68 aa)
H2Y1Y8_CIOINUncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
LOC100181824Bms1-type G domain-containing protein. (784 aa)
LOC100182620Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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