59 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100184966	Histone H2B-like; Belongs to the histone H2B family. (121 aa)
	LOC100177697	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (236 aa)
	F6YRG2_CIOIN	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (211 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	LOC100179515	TFIIA-alpha and beta-like factor isoform X1. (332 aa)
	elk	Transcription factor protein. (946 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	F6U6E1_CIOIN	CXXC-type domain-containing protein. (146 aa)
	LOC100182745	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1. (347 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	gi1	G protein alpha subunit Gi splicing variant CiGi1a. (354 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	F6PR32_CIOIN	Uncharacterized protein. (354 aa)
	LOC100184120	CS domain-containing protein. (193 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100187100	Lysine-specific histone demethylase 1A. (705 aa)
	F6WVT9_CIOIN	Protein kinase domain-containing protein. (505 aa)
	L7N0T2_CIOIN	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (80 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	F6S4F7_CIOIN	Non-specific serine/threonine protein kinase. (512 aa)
	usf	Transcription factor protein. (325 aa)
	F6QZH0_CIOIN	Protein kinase domain-containing protein. (459 aa)
	LOC100181821	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (376 aa)
	F6R7T5_CIOIN	Uncharacterized protein. (1533 aa)
	cbfb	Core-binding factor, b subunit isoform X1. (181 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F7ADJ3_CIOIN	Uncharacterized protein. (337 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F6Z277_CIOIN	Uncharacterized protein. (210 aa)
	F6UIG7_CIOIN	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (461 aa)
	LOC100176140	KN motif and ankyrin repeat domain-containing protein 1-like isoform X1. (1238 aa)
	F6YNJ1_CIOIN	HATPase_c domain-containing protein. (666 aa)
	F7BLX7_CIOIN	SH2 domain-containing protein. (245 aa)
	F7BLX1_CIOIN	Uncharacterized protein. (253 aa)
	F6TCN9_CIOIN	C3H1-type domain-containing protein. (205 aa)
	F6YAH3_CIOIN	Uncharacterized protein. (840 aa)
	F6YR71_CIOIN	Peptidylprolyl isomerase. (439 aa)
	F6XYH1_CIOIN	Uncharacterized protein. (418 aa)
	F6X4N7_CIOIN	Serine/threonine-protein phosphatase. (324 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	H2XJR7_CIOIN	Uncharacterized protein. (172 aa)
	LOC100184417	Exportin-1. (1071 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XME1_CIOIN	TPR_REGION domain-containing protein. (223 aa)
	LOC100178517	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (142 aa)
	H2XP47_CIOIN	G protein gamma domain-containing protein. (68 aa)
	zf(c2h2)-66	Zinc finger protein (C2H2)-66. (337 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	foxa-a	Transcription factor protein isoform 1. (633 aa)
	H2XXW5_CIOIN	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (75 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	H2XZH2_CIOIN	Uncharacterized protein. (321 aa)
	LOC100185742	Guanine nucleotide-binding protein subunit beta-5. (376 aa)
	H2Y0G9_CIOIN	WD_REPEATS_REGION domain-containing protein. (692 aa)
	H2Y1Q1_CIOIN	Uncharacterized protein. (356 aa)
	H2Y3C0_CIOIN	Fork-head domain-containing protein. (235 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PR32_CIOIN	H2XP47_CIOIN	ENSCINP00000013090	ENSCINP00000031430	Uncharacterized protein.	G protein gamma domain-containing protein.	0.819
F6PR32_CIOIN	H2XXW5_CIOIN	ENSCINP00000013090	ENSCINP00000034499	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.819
F6PR32_CIOIN	H2Y1Q1_CIOIN	ENSCINP00000013090	ENSCINP00000035835	Uncharacterized protein.	Uncharacterized protein.	0.548
F6PR32_CIOIN	LOC100182745	ENSCINP00000013090	ENSCINP00000007802	Uncharacterized protein.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.939
F6PR32_CIOIN	LOC100185742	ENSCINP00000013090	ENSCINP00000035188	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta-5.	0.885
F6PR32_CIOIN	gi1	ENSCINP00000013090	ENSCINP00000010912	Uncharacterized protein.	G protein alpha subunit Gi splicing variant CiGi1a.	0.548
F6QR00_CIOIN	F6X618_CIOIN	ENSCINP00000013245	ENSCINP00000003619	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.995
F6QR00_CIOIN	F6XIG6_CIOIN	ENSCINP00000013245	ENSCINP00000021902	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
F6QR00_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000013245	ENSCINP00000019931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	F6Z277_CIOIN	ENSCINP00000013245	ENSCINP00000022479	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.916
F6QR00_CIOIN	H2XJG6_CIOIN	ENSCINP00000013245	ENSCINP00000029798	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XVJ2_CIOIN	ENSCINP00000013245	ENSCINP00000033676	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XZ54_CIOIN	ENSCINP00000013245	ENSCINP00000034938	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	LOC100177214	ENSCINP00000013245	ENSCINP00000005464	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.967
F6QR00_CIOIN	LOC100177272	ENSCINP00000013245	ENSCINP00000016166	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
F6QR00_CIOIN	LOC100177778	ENSCINP00000013245	ENSCINP00000010264	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB7.	0.999
F6QR00_CIOIN	LOC100178283	ENSCINP00000013245	ENSCINP00000021822	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
F6QR00_CIOIN	LOC100179515	ENSCINP00000013245	ENSCINP00000003684	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIA-alpha and beta-like factor isoform X1.	0.928
F6QR00_CIOIN	LOC100179943	ENSCINP00000013245	ENSCINP00000012710	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor IIF subunit 2.	0.995
F6QR00_CIOIN	LOC100181341	ENSCINP00000013245	ENSCINP00000030207	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB11-a isoform X1.	0.999