(11 nodes) Plasma lipoprotein remodeling network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100182351	Plasminogen-like; Belongs to the peptidase S1 family. (575 aa)
	F6XQV0_CIOIN	Vitellogenin domain-containing protein. (896 aa)
	LOC100182315	Protein disulfide-isomerase. (503 aa)
	F6SQC0_CIOIN	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family. (376 aa)
	F6SM76_CIOIN	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (608 aa)
	F6YWW9_CIOIN	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (688 aa)
	LOC113474034	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (607 aa)
	F6Q4W5_CIOIN	PLAT domain-containing protein. (445 aa)
	F6YF25_CIOIN	VWFA domain-containing protein. (266 aa)
	F6VR50_CIOIN	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family. (221 aa)
	F6TCY4_CIOIN	Kringle domain-containing protein. (182 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SQC0_CIOIN	F6VR50_CIOIN	ENSCINP00000006516	ENSCINP00000024638	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	0.949
F6VR50_CIOIN	F6SQC0_CIOIN	ENSCINP00000024638	ENSCINP00000006516	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	0.949
F6XQV0_CIOIN	F6YF25_CIOIN	ENSCINP00000005177	ENSCINP00000024284	Vitellogenin domain-containing protein.	VWFA domain-containing protein.	0.950
F6XQV0_CIOIN	LOC100182315	ENSCINP00000005177	ENSCINP00000006342	Vitellogenin domain-containing protein.	Protein disulfide-isomerase.	0.856
F6YF25_CIOIN	F6XQV0_CIOIN	ENSCINP00000024284	ENSCINP00000005177	VWFA domain-containing protein.	Vitellogenin domain-containing protein.	0.950
F6YF25_CIOIN	LOC100182315	ENSCINP00000024284	ENSCINP00000006342	VWFA domain-containing protein.	Protein disulfide-isomerase.	0.494
LOC100182315	F6XQV0_CIOIN	ENSCINP00000006342	ENSCINP00000005177	Protein disulfide-isomerase.	Vitellogenin domain-containing protein.	0.856
LOC100182315	F6YF25_CIOIN	ENSCINP00000006342	ENSCINP00000024284	Protein disulfide-isomerase.	VWFA domain-containing protein.	0.494