24 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XUY6_CIOIN	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (145 aa)
	LOC100185811	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (544 aa)
	LOC100183592	COP9 signalosome complex subunit 4. (409 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	F6R6F3_CIOIN	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1324 aa)
	F6UYB4_CIOIN	Myosin-VI_CBD domain-containing protein. (173 aa)
	F6UY41_CIOIN	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1100 aa)
	F6RYG5_CIOIN	RRM domain-containing protein. (189 aa)
	F6YGM8_CIOIN	Uncharacterized protein. (547 aa)
	F6Q0M2_CIOIN	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (452 aa)
	F7A631_CIOIN	Uncharacterized protein. (221 aa)
	LOC100181431	Uncharacterized protein. (535 aa)
	rgc	RRM domain-containing protein. (159 aa)
	LOC100177051	PCI domain-containing protein. (442 aa)
	LOC100175966	Glial fibrillary acidic protein; Belongs to the intermediate filament family. (438 aa)
	LOC100176942	COP9 signalosome complex subunit 1. (475 aa)
	F6YF53_CIOIN	RRM domain-containing protein. (159 aa)
	F6QW72_CIOIN	PITH domain-containing protein. (226 aa)
	H2XQH7_CIOIN	RRM domain-containing protein. (283 aa)
	H2XTQ6_CIOIN	SPOC domain-containing protein. (247 aa)
	LOC100186689	PWI domain-containing protein. (159 aa)
	ENSCINP00000033882	annotation not available (91 aa)
	H2XX28_CIOIN	RRM domain-containing protein. (201 aa)
	H2Y1H5_CIOIN	RRM domain-containing protein. (170 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000033882	F6R472_CIOIN	ENSCINP00000033882	ENSCINP00000006037	annotation not available	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.693
ENSCINP00000033882	H2XUY6_CIOIN	ENSCINP00000033882	ENSCINP00000033470	annotation not available	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.612
ENSCINP00000033882	LOC100176942	ENSCINP00000033882	ENSCINP00000019290	annotation not available	COP9 signalosome complex subunit 1.	0.974
ENSCINP00000033882	LOC100177051	ENSCINP00000033882	ENSCINP00000017753	annotation not available	PCI domain-containing protein.	0.543
ENSCINP00000033882	LOC100183592	ENSCINP00000033882	ENSCINP00000005832	annotation not available	COP9 signalosome complex subunit 4.	0.975
F6Q0M2_CIOIN	LOC100181431	ENSCINP00000009532	ENSCINP00000011040	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.460
F6Q0M2_CIOIN	LOC100185811	ENSCINP00000009532	ENSCINP00000003265	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.518
F6QW72_CIOIN	LOC100181431	ENSCINP00000025508	ENSCINP00000011040	PITH domain-containing protein.	Uncharacterized protein.	0.423
F6QW72_CIOIN	LOC100185811	ENSCINP00000025508	ENSCINP00000003265	PITH domain-containing protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.454
F6R472_CIOIN	ENSCINP00000033882	ENSCINP00000006037	ENSCINP00000033882	CULLIN_2 domain-containing protein; Belongs to the cullin family.	annotation not available	0.693
F6R472_CIOIN	H2XUY6_CIOIN	ENSCINP00000006037	ENSCINP00000033470	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.547
F6R472_CIOIN	LOC100176942	ENSCINP00000006037	ENSCINP00000019290	CULLIN_2 domain-containing protein; Belongs to the cullin family.	COP9 signalosome complex subunit 1.	0.712
F6R472_CIOIN	LOC100177051	ENSCINP00000006037	ENSCINP00000017753	CULLIN_2 domain-containing protein; Belongs to the cullin family.	PCI domain-containing protein.	0.693
F6R472_CIOIN	LOC100183592	ENSCINP00000006037	ENSCINP00000005832	CULLIN_2 domain-containing protein; Belongs to the cullin family.	COP9 signalosome complex subunit 4.	0.745
F6UY41_CIOIN	F6UYB4_CIOIN	ENSCINP00000007417	ENSCINP00000007407	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin-VI_CBD domain-containing protein.	0.939
F6UYB4_CIOIN	F6UY41_CIOIN	ENSCINP00000007407	ENSCINP00000007417	Myosin-VI_CBD domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.939
F6YF53_CIOIN	H2XQH7_CIOIN	ENSCINP00000024280	ENSCINP00000031911	RRM domain-containing protein.	RRM domain-containing protein.	0.710
H2XQH7_CIOIN	F6YF53_CIOIN	ENSCINP00000031911	ENSCINP00000024280	RRM domain-containing protein.	RRM domain-containing protein.	0.710
H2XQH7_CIOIN	H2XX28_CIOIN	ENSCINP00000031911	ENSCINP00000034212	RRM domain-containing protein.	RRM domain-containing protein.	0.513
H2XQH7_CIOIN	H2Y1H5_CIOIN	ENSCINP00000031911	ENSCINP00000035759	RRM domain-containing protein.	RRM domain-containing protein.	0.703