34 items (Ciona intestinalis) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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experimentally determined

Predicted Interactions

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gene fusions

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protein homology

Your Input:
	LOC100178283	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	F6XIG6_CIOIN	RPOL4c domain-containing protein. (133 aa)
	F6Z277_CIOIN	Uncharacterized protein. (210 aa)
	F6UIG7_CIOIN	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (461 aa)
	LOC100176140	KN motif and ankyrin repeat domain-containing protein 1-like isoform X1. (1238 aa)
	LOC100187100	Lysine-specific histone demethylase 1A. (705 aa)
	F6QR00_CIOIN	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	LOC100184120	CS domain-containing protein. (193 aa)
	LOC100179943	General transcription factor IIF subunit 2. (257 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC100177778	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	F6U6E1_CIOIN	CXXC-type domain-containing protein. (146 aa)
	LOC100177214	Uncharacterized protein. (316 aa)
	LOC100179515	TFIIA-alpha and beta-like factor isoform X1. (332 aa)
	F6X618_CIOIN	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (515 aa)
	LOC100184966	Histone H2B-like; Belongs to the histone H2B family. (121 aa)
	F6YNJ1_CIOIN	HATPase_c domain-containing protein. (666 aa)
	F6TCN9_CIOIN	C3H1-type domain-containing protein. (205 aa)
	H2Y3C0_CIOIN	Fork-head domain-containing protein. (235 aa)
	H2XZ54_CIOIN	RPOLD domain-containing protein. (286 aa)
	foxa-a	Transcription factor protein isoform 1. (633 aa)
	H2XVJ2_CIOIN	Uncharacterized protein. (141 aa)
	LOC101242260	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (79 aa)
	zf(c2h2)-66	Zinc finger protein (C2H2)-66. (337 aa)
	LOC100181341	DNA-directed RNA polymerase II subunit RPB11-a isoform X1. (117 aa)
	H2XJG6_CIOIN	Uncharacterized protein. (211 aa)
	F6XYH1_CIOIN	Uncharacterized protein. (418 aa)
	LOC100177272	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	L7N0T2_CIOIN	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (80 aa)
	usf	Transcription factor protein. (325 aa)
	LOC100181821	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (376 aa)
	F6R7T5_CIOIN	Uncharacterized protein. (1533 aa)
	cbfb	Core-binding factor, b subunit isoform X1. (181 aa)
	F6Y5Q3_CIOIN	RPOLD domain-containing protein. (151 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QR00_CIOIN	F6X618_CIOIN	ENSCINP00000013245	ENSCINP00000003619	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.995
F6QR00_CIOIN	F6XIG6_CIOIN	ENSCINP00000013245	ENSCINP00000021902	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
F6QR00_CIOIN	F6Y5Q3_CIOIN	ENSCINP00000013245	ENSCINP00000019931	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	F6Z277_CIOIN	ENSCINP00000013245	ENSCINP00000022479	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.916
F6QR00_CIOIN	H2XJG6_CIOIN	ENSCINP00000013245	ENSCINP00000029798	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XVJ2_CIOIN	ENSCINP00000013245	ENSCINP00000033676	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
F6QR00_CIOIN	H2XZ54_CIOIN	ENSCINP00000013245	ENSCINP00000034938	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.983
F6QR00_CIOIN	LOC100177214	ENSCINP00000013245	ENSCINP00000005464	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.967
F6QR00_CIOIN	LOC100177272	ENSCINP00000013245	ENSCINP00000016166	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
F6QR00_CIOIN	LOC100177778	ENSCINP00000013245	ENSCINP00000010264	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB7.	0.999
F6QR00_CIOIN	LOC100178283	ENSCINP00000013245	ENSCINP00000021822	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
F6QR00_CIOIN	LOC100179515	ENSCINP00000013245	ENSCINP00000003684	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIA-alpha and beta-like factor isoform X1.	0.928
F6QR00_CIOIN	LOC100179943	ENSCINP00000013245	ENSCINP00000012710	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor IIF subunit 2.	0.995
F6QR00_CIOIN	LOC100181341	ENSCINP00000013245	ENSCINP00000030207	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB11-a isoform X1.	0.999
F6QR00_CIOIN	LOC100181821	ENSCINP00000013245	ENSCINP00000018002	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.635
F6QR00_CIOIN	LOC100183843	ENSCINP00000013245	ENSCINP00000011952	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H2A; Belongs to the histone H2A family.	0.662
F6QR00_CIOIN	LOC100184966	ENSCINP00000013245	ENSCINP00000002195	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Histone H2B-like; Belongs to the histone H2B family.	0.864
F6QR00_CIOIN	LOC101242260	ENSCINP00000013245	ENSCINP00000032951	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
F6R7T5_CIOIN	F6UIG7_CIOIN	ENSCINP00000018331	ENSCINP00000022837	Uncharacterized protein.	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.875
F6R7T5_CIOIN	F6XYH1_CIOIN	ENSCINP00000018331	ENSCINP00000027057	Uncharacterized protein.	Uncharacterized protein.	0.616