48 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XRV6_CIOIN	C2 domain-containing protein. (213 aa)
	H2XUT3_CIOIN	Uncharacterized protein. (511 aa)
	LOC100175581	Uncharacterized protein LOC100175581. (186 aa)
	H2XYD7_CIOIN	CUE domain-containing protein. (66 aa)
	H2Y0N7_CIOIN	Pkinase_Tyr domain-containing protein. (196 aa)
	H2Y1K9_CIOIN	Uncharacterized protein. (674 aa)
	H2Y256_CIOIN	Uncharacterized protein. (395 aa)
	H2Y3S9_CIOIN	RPN2_C domain-containing protein. (79 aa)
	LOC100177213	Major facilitator superfamily domain-containing protein 1 isoform X1. (516 aa)
	LOC100187037	Uncharacterized protein. (520 aa)
	F6VM15_CIOIN	RanBP2-type domain-containing protein. (339 aa)
	F6YEX1_CIOIN	Uncharacterized protein. (184 aa)
	LOC100184598	Sequestosome-1 isoform X1. (329 aa)
	F6TER2_CIOIN	Protein kinase domain-containing protein. (206 aa)
	Q4H3C1_CIOIN	IkappaB kinase. (172 aa)
	F7BJI5_CIOIN	NACHT domain-containing protein. (190 aa)
	F6ZP37_CIOIN	Uncharacterized protein. (310 aa)
	F6QCI8_CIOIN	Uncharacterized protein. (352 aa)
	F6R544_CIOIN	Uncharacterized protein. (87 aa)
	betaTrCP	Beta-transducin repeat-containing HOMOLOGUE protein. (621 aa)
	LOC100178755	Transmembrane protein 189. (282 aa)
	LOC100176760	Proteasome subunit alpha type. (253 aa)
	F6XR36_CIOIN	Protein kinase domain-containing protein. (614 aa)
	LOC100184366	Uncharacterized protein LOC100184366. (391 aa)
	F7A9Z4_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (275 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	F6YIF4_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (478 aa)
	Pellino	Uncharacterized protein. (453 aa)
	nfkbp105	Uncharacterized protein. (1202 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	F6RUS9_CIOIN	Uncharacterized protein. (414 aa)
	Tak1/mapkkk7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (190 aa)
	r27a	R27a protein isoform X1. (155 aa)
	F6W9U8_CIOIN	PB1 domain-containing protein. (224 aa)
	LOC100181511	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	LOC100184240	Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	F6TTI3_CIOIN	Ubiquitin carboxyl-terminal hydrolase. (512 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	F6W461_CIOIN	Uncharacterized protein. (211 aa)
	F6SL96_CIOIN	NACHT domain-containing protein. (218 aa)
	LOC100179989	PPM-type phosphatase domain-containing protein. (490 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	F6W3X7_CIOIN	ANK_REP_REGION domain-containing protein. (509 aa)
	F6ZEW6_CIOIN	Death domain-containing protein. (197 aa)
	LOC100175015	NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform X1. (192 aa)
	Q1RPY5_CIOIN	Zinc finger protein. (579 aa)
	LOC100182516	RING-box protein 1. (104 aa)
	LOC113474176	kxDL motif-containing protein 1-like. (139 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PW28_CIOIN	F6VJQ1_CIOIN	ENSCINP00000013359	ENSCINP00000026820	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.718
F6PW28_CIOIN	F6W9U8_CIOIN	ENSCINP00000013359	ENSCINP00000002565	CULLIN_2 domain-containing protein; Belongs to the cullin family.	PB1 domain-containing protein.	0.402
F6PW28_CIOIN	F6ZJN8_CIOIN	ENSCINP00000013359	ENSCINP00000015598	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.742
F6PW28_CIOIN	H2Y3S9_CIOIN	ENSCINP00000013359	ENSCINP00000036564	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RPN2_C domain-containing protein.	0.520
F6PW28_CIOIN	LOC100175581	ENSCINP00000013359	ENSCINP00000033899	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein LOC100175581.	0.402
F6PW28_CIOIN	LOC100176760	ENSCINP00000013359	ENSCINP00000017839	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Proteasome subunit alpha type.	0.571
F6PW28_CIOIN	LOC100181511	ENSCINP00000013359	ENSCINP00000003403	CULLIN_2 domain-containing protein; Belongs to the cullin family.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.998
F6PW28_CIOIN	LOC100182516	ENSCINP00000013359	ENSCINP00000031380	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein 1.	0.998
F6PW28_CIOIN	LOC100184240	ENSCINP00000013359	ENSCINP00000006560	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family.	0.476
F6PW28_CIOIN	LOC100184598	ENSCINP00000013359	ENSCINP00000023991	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Sequestosome-1 isoform X1.	0.402
F6PW28_CIOIN	LOC100185384	ENSCINP00000013359	ENSCINP00000010307	CULLIN_2 domain-containing protein; Belongs to the cullin family.	ubiquitin-60S ribosomal protein L40.	0.803
F6PW28_CIOIN	Q4H3C1_CIOIN	ENSCINP00000013359	ENSCINP00000021745	CULLIN_2 domain-containing protein; Belongs to the cullin family.	IkappaB kinase.	0.617
F6PW28_CIOIN	betaTrCP	ENSCINP00000013359	ENSCINP00000018885	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Beta-transducin repeat-containing HOMOLOGUE protein.	0.978
F6PW28_CIOIN	nfkbp105	ENSCINP00000013359	ENSCINP00000014252	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.624
F6PW28_CIOIN	r27a	ENSCINP00000013359	ENSCINP00000012037	CULLIN_2 domain-containing protein; Belongs to the cullin family.	R27a protein isoform X1.	0.827
F6R544_CIOIN	F6TER2_CIOIN	ENSCINP00000020077	ENSCINP00000023589	Uncharacterized protein.	Protein kinase domain-containing protein.	0.581
F6R544_CIOIN	F6TTI3_CIOIN	ENSCINP00000020077	ENSCINP00000008849	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.480
F6R544_CIOIN	F6VJQ1_CIOIN	ENSCINP00000020077	ENSCINP00000026820	Uncharacterized protein.	Uncharacterized protein.	0.438
F6R544_CIOIN	F6VM15_CIOIN	ENSCINP00000020077	ENSCINP00000026560	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.447
F6R544_CIOIN	F6YIF4_CIOIN	ENSCINP00000020077	ENSCINP00000015329	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.919