(7 nodes) ABC transporter network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y2G7_CIOIN	ABC transporter domain-containing protein. (176 aa)
	ENSCINP00000016146	annotation not available (89 aa)
	LOC100177585	ABC transporter domain-containing protein. (220 aa)
	H2Y0M9_CIOIN	ABC transporter domain-containing protein. (173 aa)
	H2XJT6_CIOIN	ABC transmembrane type-1 domain-containing protein. (229 aa)
	H2XQ32_CIOIN	ABC transmembrane type-1 domain-containing protein. (641 aa)
	H2XS46_CIOIN	ABC transporter domain-containing protein. (227 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2XJT6_CIOIN	H2Y0M9_CIOIN	ENSCINP00000029918	ENSCINP00000035463	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.925
H2XQ32_CIOIN	H2Y2G7_CIOIN	ENSCINP00000031766	ENSCINP00000036102	ABC transmembrane type-1 domain-containing protein.	ABC transporter domain-containing protein.	0.925
H2Y0M9_CIOIN	H2XJT6_CIOIN	ENSCINP00000035463	ENSCINP00000029918	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.925
H2Y2G7_CIOIN	H2XQ32_CIOIN	ENSCINP00000036102	ENSCINP00000031766	ABC transporter domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.925