13 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6PP61_CIOIN	Proteasome subunit beta; Belongs to the peptidase T1B family. (260 aa)
	F7A955_CIOIN	Proteasome subunit beta. (221 aa)
	LOC100183036	Proteasome subunit alpha type. (220 aa)
	F6RUQ3_CIOIN	Proteasome subunit alpha type. (251 aa)
	LOC100177476	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (251 aa)
	LOC100176760	Proteasome subunit alpha type. (253 aa)
	LOC100186602	Proteasome subunit beta. (268 aa)
	F6Z491_CIOIN	Proteasome subunit alpha type. (242 aa)
	LOC113474124	Proteasome subunit beta. (205 aa)
	H2XSU1_CIOIN	Proteasome subunit beta. (239 aa)
	LOC100179585	Proteasome subunit alpha type. (233 aa)
	zeta	Proteasome subunit beta. (276 aa)
	LOC100179460	Proteasome subunit beta. (200 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PP61_CIOIN	F6RUQ3_CIOIN	ENSCINP00000004728	ENSCINP00000010909	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
F6PP61_CIOIN	F6Z491_CIOIN	ENSCINP00000004728	ENSCINP00000018974	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
F6PP61_CIOIN	F7A955_CIOIN	ENSCINP00000004728	ENSCINP00000009362	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6PP61_CIOIN	H2XSU1_CIOIN	ENSCINP00000004728	ENSCINP00000032725	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6PP61_CIOIN	LOC100176760	ENSCINP00000004728	ENSCINP00000017839	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
F6PP61_CIOIN	LOC100177476	ENSCINP00000004728	ENSCINP00000016256	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
F6PP61_CIOIN	LOC100179460	ENSCINP00000004728	ENSCINP00000035681	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6PP61_CIOIN	LOC100179585	ENSCINP00000004728	ENSCINP00000033277	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
F6PP61_CIOIN	LOC100183036	ENSCINP00000004728	ENSCINP00000010741	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
F6PP61_CIOIN	LOC100186602	ENSCINP00000004728	ENSCINP00000018314	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6PP61_CIOIN	LOC113474124	ENSCINP00000004728	ENSCINP00000019473	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6PP61_CIOIN	zeta	ENSCINP00000004728	ENSCINP00000033619	Proteasome subunit beta; Belongs to the peptidase T1B family.	Proteasome subunit beta.	0.999
F6RUQ3_CIOIN	F6PP61_CIOIN	ENSCINP00000010909	ENSCINP00000004728	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
F6RUQ3_CIOIN	F6Z491_CIOIN	ENSCINP00000010909	ENSCINP00000018974	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
F6RUQ3_CIOIN	F7A955_CIOIN	ENSCINP00000010909	ENSCINP00000009362	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
F6RUQ3_CIOIN	H2XSU1_CIOIN	ENSCINP00000010909	ENSCINP00000032725	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
F6RUQ3_CIOIN	LOC100176760	ENSCINP00000010909	ENSCINP00000017839	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
F6RUQ3_CIOIN	LOC100177476	ENSCINP00000010909	ENSCINP00000016256	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
F6RUQ3_CIOIN	LOC100179460	ENSCINP00000010909	ENSCINP00000035681	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
F6RUQ3_CIOIN	LOC100179585	ENSCINP00000010909	ENSCINP00000033277	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999