(22 nodes) AMP-binding enzyme network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XYB0_CIOIN	Uncharacterized protein. (664 aa)
	H2XYN5_CIOIN	Acetyl-coenzyme A synthetase. (633 aa)
	F6W7N8_CIOIN	Uncharacterized protein. (463 aa)
	F6S2A1_CIOIN	Uncharacterized protein. (815 aa)
	F7B0S6_CIOIN	Acetyl-coenzyme A synthetase. (667 aa)
	LOC100187395	Uncharacterized protein. (541 aa)
	LOC100180897	4-coumarate--CoA ligase 1-like. (518 aa)
	F7B684_CIOIN	AMP-binding domain-containing protein. (656 aa)
	F6U4H3_CIOIN	Uncharacterized protein. (624 aa)
	F6Y420_CIOIN	AMP-binding domain-containing protein. (394 aa)
	F6S2V0_CIOIN	Uncharacterized protein. (523 aa)
	F6SZU4_CIOIN	AMP-binding domain-containing protein. (640 aa)
	LOC100185939	AMP-binding domain-containing protein. (702 aa)
	LOC100181730	Uncharacterized protein. (528 aa)
	LOC100181179	Uncharacterized protein. (582 aa)
	H2XRG1_CIOIN	Uncharacterized protein. (518 aa)
	H2XLI4_CIOIN	Uncharacterized protein. (549 aa)
	F6UFU1_CIOIN	Uncharacterized protein. (496 aa)
	H2XXM0_CIOIN	Uncharacterized protein. (520 aa)
	F6UGQ7_CIOIN	Uncharacterized protein. (485 aa)
	F6W0C3_CIOIN	Uncharacterized protein. (683 aa)
	H2Y3M9_CIOIN	Uncharacterized protein. (539 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S2A1_CIOIN	F6S2V0_CIOIN	ENSCINP00000018560	ENSCINP00000006563	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	F6SZU4_CIOIN	ENSCINP00000018560	ENSCINP00000005887	Uncharacterized protein.	AMP-binding domain-containing protein.	0.685
F6S2A1_CIOIN	F6UFU1_CIOIN	ENSCINP00000018560	ENSCINP00000024387	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	F6UGQ7_CIOIN	ENSCINP00000018560	ENSCINP00000024060	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	F6W0C3_CIOIN	ENSCINP00000018560	ENSCINP00000022275	Uncharacterized protein.	Uncharacterized protein.	0.650
F6S2A1_CIOIN	F6W7N8_CIOIN	ENSCINP00000018560	ENSCINP00000021997	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	F7B0S6_CIOIN	ENSCINP00000018560	ENSCINP00000017977	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.650
F6S2A1_CIOIN	F7B684_CIOIN	ENSCINP00000018560	ENSCINP00000010953	Uncharacterized protein.	AMP-binding domain-containing protein.	0.436
F6S2A1_CIOIN	H2XLI4_CIOIN	ENSCINP00000018560	ENSCINP00000030516	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	H2XRG1_CIOIN	ENSCINP00000018560	ENSCINP00000032245	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	H2XXM0_CIOIN	ENSCINP00000018560	ENSCINP00000034404	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	H2XYB0_CIOIN	ENSCINP00000018560	ENSCINP00000034644	Uncharacterized protein.	Uncharacterized protein.	0.650
F6S2A1_CIOIN	H2XYN5_CIOIN	ENSCINP00000018560	ENSCINP00000034769	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.650
F6S2A1_CIOIN	H2Y3M9_CIOIN	ENSCINP00000018560	ENSCINP00000036514	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	LOC100180897	ENSCINP00000018560	ENSCINP00000013265	Uncharacterized protein.	4-coumarate--CoA ligase 1-like.	0.718
F6S2A1_CIOIN	LOC100181179	ENSCINP00000018560	ENSCINP00000000455	Uncharacterized protein.	Uncharacterized protein.	0.787
F6S2A1_CIOIN	LOC100181730	ENSCINP00000018560	ENSCINP00000000724	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2A1_CIOIN	LOC100185939	ENSCINP00000018560	ENSCINP00000005870	Uncharacterized protein.	AMP-binding domain-containing protein.	0.685
F6S2A1_CIOIN	LOC100187395	ENSCINP00000018560	ENSCINP00000013903	Uncharacterized protein.	Uncharacterized protein.	0.718
F6S2V0_CIOIN	F6S2A1_CIOIN	ENSCINP00000006563	ENSCINP00000018560	Uncharacterized protein.	Uncharacterized protein.	0.718