(6 nodes) UBA-like domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100180811	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (258 aa)
	F6SW03_CIOIN	Uncharacterized protein. (362 aa)
	LOC100175410	UBA-like domain-containing protein 2-B. (114 aa)
	LOC100179235	N_BRCA1_IG domain-containing protein. (241 aa)
	LOC100177760	FAS-associated factor 1-like. (168 aa)
	F7BMH5_CIOIN	UBX domain-containing protein. (447 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SW03_CIOIN	F7BMH5_CIOIN	ENSCINP00000002958	ENSCINP00000024432	Uncharacterized protein.	UBX domain-containing protein.	0.990
F6SW03_CIOIN	LOC100177760	ENSCINP00000002958	ENSCINP00000029879	Uncharacterized protein.	FAS-associated factor 1-like.	0.642
F7BMH5_CIOIN	F6SW03_CIOIN	ENSCINP00000024432	ENSCINP00000002958	UBX domain-containing protein.	Uncharacterized protein.	0.990
F7BMH5_CIOIN	LOC100177760	ENSCINP00000024432	ENSCINP00000029879	UBX domain-containing protein.	FAS-associated factor 1-like.	0.884
F7BMH5_CIOIN	LOC100180811	ENSCINP00000024432	ENSCINP00000012690	UBX domain-containing protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.651
LOC100177760	F6SW03_CIOIN	ENSCINP00000029879	ENSCINP00000002958	FAS-associated factor 1-like.	Uncharacterized protein.	0.642
LOC100177760	F7BMH5_CIOIN	ENSCINP00000029879	ENSCINP00000024432	FAS-associated factor 1-like.	UBX domain-containing protein.	0.884
LOC100180811	F7BMH5_CIOIN	ENSCINP00000012690	ENSCINP00000024432	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	UBX domain-containing protein.	0.651