27 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113474017	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like. (143 aa)
	LOC100178367	Small ubiquitin-related modifier. (99 aa)
	F6VJQ1_CIOIN	Uncharacterized protein. (347 aa)
	LOC100180815	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	F6TDQ4_CIOIN	Ubiquitin-like domain-containing protein. (251 aa)
	F6PQA6_CIOIN	Ubiquitin-like domain-containing protein. (232 aa)
	F6SGF7_CIOIN	Uncharacterized protein. (320 aa)
	F6YYL7_CIOIN	Ubiquitin-like domain-containing protein. (434 aa)
	F6YNL7_CIOIN	Ubiquitin-like domain-containing protein. (171 aa)
	F6YQ21_CIOIN	Ubiquitin-like domain-containing protein. (193 aa)
	F7AWV5_CIOIN	Ubiquitin-like domain-containing protein. (250 aa)
	LOC100175173	Ubiquitin-like domain-containing protein. (343 aa)
	LOC100175472	Ubiquilin-1. (527 aa)
	F7AI93_CIOIN	Uncharacterized protein. (784 aa)
	LOC100178394	F-box only protein 7. (515 aa)
	F6WSZ7_CIOIN	Uncharacterized protein. (591 aa)
	LOC100176246	Ubiquitin-like domain-containing protein. (78 aa)
	F6TTI3_CIOIN	Ubiquitin carboxyl-terminal hydrolase. (512 aa)
	LOC100187409	Transmembrane and ubiquitin-like domain-containing protein 1 isoform X3. (287 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	ci-cmub116	Radial spoke protein CMUB116. (765 aa)
	r27a	R27a protein isoform X1. (155 aa)
	F6VE75_CIOIN	Ubiquitin-like domain-containing protein. (230 aa)
	LOC100183479	Ankyrin repeat domain-containing protein 60. (367 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	F7B3P4_CIOIN	Uncharacterized protein. (325 aa)
	Uhrf2	Uncharacterized protein. (743 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SGF7_CIOIN	F6VJQ1_CIOIN	ENSCINP00000024400	ENSCINP00000026820	Uncharacterized protein.	Uncharacterized protein.	0.507
F6SGF7_CIOIN	F6YNL7_CIOIN	ENSCINP00000024400	ENSCINP00000023412	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.706
F6SGF7_CIOIN	F6ZJN8_CIOIN	ENSCINP00000024400	ENSCINP00000015598	Uncharacterized protein.	Uncharacterized protein.	0.507
F6SGF7_CIOIN	F7B3P4_CIOIN	ENSCINP00000024400	ENSCINP00000017031	Uncharacterized protein.	Uncharacterized protein.	0.709
F6SGF7_CIOIN	LOC100175472	ENSCINP00000024400	ENSCINP00000017880	Uncharacterized protein.	Ubiquilin-1.	0.545
F6SGF7_CIOIN	LOC100176246	ENSCINP00000024400	ENSCINP00000006091	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.566
F6SGF7_CIOIN	LOC100178367	ENSCINP00000024400	ENSCINP00000032913	Uncharacterized protein.	Small ubiquitin-related modifier.	0.424
F6SGF7_CIOIN	LOC100180815	ENSCINP00000024400	ENSCINP00000026740	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.507
F6SGF7_CIOIN	LOC100185384	ENSCINP00000024400	ENSCINP00000010307	Uncharacterized protein.	ubiquitin-60S ribosomal protein L40.	0.684
F6SGF7_CIOIN	r27a	ENSCINP00000024400	ENSCINP00000012037	Uncharacterized protein.	R27a protein isoform X1.	0.686
F6TDQ4_CIOIN	F6VJQ1_CIOIN	ENSCINP00000025635	ENSCINP00000026820	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
F6TDQ4_CIOIN	F6YNL7_CIOIN	ENSCINP00000025635	ENSCINP00000023412	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.460
F6TDQ4_CIOIN	F6ZJN8_CIOIN	ENSCINP00000025635	ENSCINP00000015598	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.444
F6TDQ4_CIOIN	LOC100175472	ENSCINP00000025635	ENSCINP00000017880	Ubiquitin-like domain-containing protein.	Ubiquilin-1.	0.525
F6TDQ4_CIOIN	LOC100180815	ENSCINP00000025635	ENSCINP00000026740	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.556
F6TTI3_CIOIN	F6VJQ1_CIOIN	ENSCINP00000008849	ENSCINP00000026820	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.901
F6TTI3_CIOIN	F6YNL7_CIOIN	ENSCINP00000008849	ENSCINP00000023412	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin-like domain-containing protein.	0.624
F6TTI3_CIOIN	F6ZJN8_CIOIN	ENSCINP00000008849	ENSCINP00000015598	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.903
F6TTI3_CIOIN	F7B3P4_CIOIN	ENSCINP00000008849	ENSCINP00000017031	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.788
F6TTI3_CIOIN	LOC100175472	ENSCINP00000008849	ENSCINP00000017880	Ubiquitin carboxyl-terminal hydrolase.	Ubiquilin-1.	0.690