8 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZTJ9_CIOIN	Uncharacterized protein. (896 aa)
	F6SSP8_CIOIN	Uncharacterized protein. (609 aa)
	LOC100181928	Uncharacterized protein. (686 aa)
	F6UDJ0_CIOIN	Uncharacterized protein. (1742 aa)
	LOC100177545	Suf domain-containing protein. (724 aa)
	F6SBF1_CIOIN	Uncharacterized protein. (852 aa)
	LOC100176856	Uncharacterized protein. (956 aa)
	LOC100184042	Uncharacterized protein. (611 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SBF1_CIOIN	LOC100176856	ENSCINP00000014368	ENSCINP00000017945	Uncharacterized protein.	Uncharacterized protein.	0.630
F6SBF1_CIOIN	LOC100181928	ENSCINP00000014368	ENSCINP00000005514	Uncharacterized protein.	Uncharacterized protein.	0.999
F6SSP8_CIOIN	LOC100177545	ENSCINP00000004439	ENSCINP00000013211	Uncharacterized protein.	Suf domain-containing protein.	0.428
F6UDJ0_CIOIN	LOC100184042	ENSCINP00000005538	ENSCINP00000035636	Uncharacterized protein.	Uncharacterized protein.	0.995
F6ZTJ9_CIOIN	LOC100176856	ENSCINP00000019832	ENSCINP00000017945	Uncharacterized protein.	Uncharacterized protein.	0.582
LOC100176856	F6SBF1_CIOIN	ENSCINP00000017945	ENSCINP00000014368	Uncharacterized protein.	Uncharacterized protein.	0.630
LOC100176856	F6ZTJ9_CIOIN	ENSCINP00000017945	ENSCINP00000019832	Uncharacterized protein.	Uncharacterized protein.	0.582
LOC100177545	F6SSP8_CIOIN	ENSCINP00000013211	ENSCINP00000004439	Suf domain-containing protein.	Uncharacterized protein.	0.428
LOC100181928	F6SBF1_CIOIN	ENSCINP00000005514	ENSCINP00000014368	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100184042	F6UDJ0_CIOIN	ENSCINP00000035636	ENSCINP00000005538	Uncharacterized protein.	Uncharacterized protein.	0.995