(14 nodes) Phosphate acyltransferases network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6S3G5_CIOIN	PlsC domain-containing protein. (586 aa)
	F6VPX3_CIOIN	PlsC domain-containing protein. (358 aa)
	F7B4P3_CIOIN	Uncharacterized protein. (488 aa)
	F6Z6W8_CIOIN	PlsC domain-containing protein. (356 aa)
	F7A2C9_CIOIN	PlsC domain-containing protein. (326 aa)
	H2XZP2_CIOIN	PlsC domain-containing protein. (185 aa)
	H2XV91_CIOIN	PlsC domain-containing protein. (381 aa)
	H2XRA8_CIOIN	PlsC domain-containing protein. (228 aa)
	H2XQK5_CIOIN	PlsC domain-containing protein. (351 aa)
	F7A7R4_CIOIN	PlsC domain-containing protein. (378 aa)
	LOC100177487	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like. (382 aa)
	F6W804_CIOIN	PlsC domain-containing protein. (281 aa)
	LOC100176558	Lysocardiolipin acyltransferase 1 isoform X2. (242 aa)
	LOC100181680	Tafazzin family protein; Belongs to the taffazin family. (260 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S3G5_CIOIN	F6W804_CIOIN	ENSCINP00000018520	ENSCINP00000021982	PlsC domain-containing protein.	PlsC domain-containing protein.	0.871
F6S3G5_CIOIN	F6Z6W8_CIOIN	ENSCINP00000018520	ENSCINP00000004555	PlsC domain-containing protein.	PlsC domain-containing protein.	0.880
F6S3G5_CIOIN	F7A7R4_CIOIN	ENSCINP00000018520	ENSCINP00000025757	PlsC domain-containing protein.	PlsC domain-containing protein.	0.880
F6S3G5_CIOIN	H2XV91_CIOIN	ENSCINP00000018520	ENSCINP00000033575	PlsC domain-containing protein.	PlsC domain-containing protein.	0.871
F6S3G5_CIOIN	LOC100176558	ENSCINP00000018520	ENSCINP00000020793	PlsC domain-containing protein.	Lysocardiolipin acyltransferase 1 isoform X2.	0.871
F6S3G5_CIOIN	LOC100177487	ENSCINP00000018520	ENSCINP00000022151	PlsC domain-containing protein.	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like.	0.871
F6VPX3_CIOIN	F6W804_CIOIN	ENSCINP00000012911	ENSCINP00000021982	PlsC domain-containing protein.	PlsC domain-containing protein.	0.921
F6VPX3_CIOIN	F6Z6W8_CIOIN	ENSCINP00000012911	ENSCINP00000004555	PlsC domain-containing protein.	PlsC domain-containing protein.	0.934
F6VPX3_CIOIN	F7A7R4_CIOIN	ENSCINP00000012911	ENSCINP00000025757	PlsC domain-containing protein.	PlsC domain-containing protein.	0.934
F6VPX3_CIOIN	F7B4P3_CIOIN	ENSCINP00000012911	ENSCINP00000005007	PlsC domain-containing protein.	Uncharacterized protein.	0.453
F6VPX3_CIOIN	H2XQK5_CIOIN	ENSCINP00000012911	ENSCINP00000031939	PlsC domain-containing protein.	PlsC domain-containing protein.	0.415
F6VPX3_CIOIN	H2XRA8_CIOIN	ENSCINP00000012911	ENSCINP00000032192	PlsC domain-containing protein.	PlsC domain-containing protein.	0.453
F6VPX3_CIOIN	H2XV91_CIOIN	ENSCINP00000012911	ENSCINP00000033575	PlsC domain-containing protein.	PlsC domain-containing protein.	0.937
F6VPX3_CIOIN	H2XZP2_CIOIN	ENSCINP00000012911	ENSCINP00000035126	PlsC domain-containing protein.	PlsC domain-containing protein.	0.579
F6VPX3_CIOIN	LOC100176558	ENSCINP00000012911	ENSCINP00000020793	PlsC domain-containing protein.	Lysocardiolipin acyltransferase 1 isoform X2.	0.921
F6VPX3_CIOIN	LOC100177487	ENSCINP00000012911	ENSCINP00000022151	PlsC domain-containing protein.	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon-like.	0.937
F6W804_CIOIN	F6S3G5_CIOIN	ENSCINP00000021982	ENSCINP00000018520	PlsC domain-containing protein.	PlsC domain-containing protein.	0.871
F6W804_CIOIN	F6VPX3_CIOIN	ENSCINP00000021982	ENSCINP00000012911	PlsC domain-containing protein.	PlsC domain-containing protein.	0.921
F6W804_CIOIN	F6Z6W8_CIOIN	ENSCINP00000021982	ENSCINP00000004555	PlsC domain-containing protein.	PlsC domain-containing protein.	0.908
F6W804_CIOIN	F7A7R4_CIOIN	ENSCINP00000021982	ENSCINP00000025757	PlsC domain-containing protein.	PlsC domain-containing protein.	0.908